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[ Bron: molphy  ]

Pakket: molphy (2.3b3-2) [non-free]

[Biology] Program Package for MOLecular PHYlogenetics

ProtML is a main program in MOLPHY for inferring evolutionary trees from PROTein (amino acid) sequences by using the Maximum Likelihood method. Other programs (C language) 

 NucML:  Maximum Likelihood Inference of Nucleic Acid Phylogeny
 ProtST: Basic Statistics of Protein Sequences
 NucST:  Basic Statistics of Nucleic Acid Sequences
 NJdist: Neighbor Joining Phylogeny from Distance Matrix
Utilities (Perl) 
 mollist:  get identifiers list        molrev:   reverse DNA sequences
 molcat:   concatenate sequences       molcut:   get partial sequences
 molmerge: merge sequences             nuc2ptn:  DNA -> Amino acid
 rminsdel: remove INS/DEL sites        molcodon: get specified codon sites
 molinfo:  get varied sites            mol2mol:  MOLPHY format beautifer
 inl2mol:  Interleaved -> MOLPHY       mol2inl:  MOLPHY -> Interleaved
 mol2phy:  MOLPHY -> Sequential        phy2mol:  Sequential -> MOLPHY
 must2mol: MUST -> MOLPHY              etc.

Homepage: http://www.ism.ac.jp/ismlib/softother.e.html

Tags: Field: Biology, Implemented in: C, Role: Program, Scope: Application

Andere aan molphy gerelateerde pakketten

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.3.2.ds1-21) [i386, sparc]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc6-udeb
    dep: libc6 (>= 2.3.5-1) [niet alpha, i386, ia64, sparc]
  • dep: libc6.1 (>= 2.3.2.ds1-21) [alpha]
    GNU C Bibliotheek: Gedeelde bibliotheken
    Ook een virtueel pakket geboden door: libc6.1-udeb
    dep: libc6.1 (>= 2.3.5-1) [ia64]
  • dep: perl
    Larry Wall's Practische Extractie en Reportage Taal
  • sug: phylip
    [Biology] A package of programs for inferring phylogenies

molphy downloaden

Pakket downloaden voor alle beschikbare platforms
Platform Pakketgrootte Geïnstalleerde grootte Bestanden
alpha 356,4 kB996 kB [overzicht]
arm 266,8 kB852 kB [overzicht]
hppa 317,3 kB892 kB [overzicht]
i386 250,8 kB832 kB [overzicht]
ia64 428,3 kB1552 kB [overzicht]
mips 315,7 kB1188 kB [overzicht]
mipsel 317,3 kB1080 kB [overzicht]
powerpc 286,8 kB908 kB [overzicht]
sparc 278,2 kB848 kB [overzicht]