Pakket: concavity (0.1+dfsg.1-5)

[ Bron: concavity  ]

predictor of protein ligand binding sites from structure and conservation

ConCavity predicts protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.

ConCavity takes as input a PDB format protein structure and optionally files that characterize the evolutionary sequence conservation of the chains in the structure file.

The following result files are produced by default:

 * Residue ligand binding predictions for each chain (*.scores).
 * Residue ligand binding predictions in a PDB format file (residue
   scores placed in the temp. factor field, *_residue.pdb).
 * Pocket prediction locations in a DX format file (*.dx).
 * PyMOL script to visualize the predictions (*.pml).

Andere aan concavity gerelateerde pakketten

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5)

  GNU Standard C++ Library v3

• sug: conservation-code

  protein sequence conservation scoring tool

• sug: pymol

  Molecular Graphics System

concavity downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	238,5 kB	973,0 kB	[overzicht]
arm64	224,0 kB	941,0 kB	[overzicht]
armel	224,9 kB	933,0 kB	[overzicht]
armhf	222,9 kB	809,0 kB	[overzicht]
i386	252,5 kB	1.020,0 kB	[overzicht]
mips64el	252,7 kB	1.168,0 kB	[overzicht]
mipsel	259,2 kB	1.112,0 kB	[overzicht]
ppc64el	252,8 kB	1.130,0 kB	[overzicht]
s390x	224,1 kB	969,0 kB	[overzicht]