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Package: tree-puzzle (5.2-4)

Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Supports Format: Plain Text

Other Packages Related to tree-puzzle

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.7-1) [not alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • rec: tree-puzzle-doc
    Reconstruction of phylogenetic trees by maximum likelihood
  • sug: phylip
    [Biology] A package of programs for inferring phylogenies
  • sug: treetool
    interactive tool for displaying phylogenetic trees

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Architecture Package Size Installed Size Files
alpha 214.8 kB464 kB [list of files]
amd64 204.0 kB408 kB [list of files]
arm 200.4 kB400 kB [list of files]
armel 214.5 kB436 kB [list of files]
hppa 216.1 kB428 kB [list of files]
i386 186.7 kB340 kB [list of files]
ia64 274.7 kB740 kB [list of files]
mips 226.0 kB512 kB [list of files]
mipsel 224.3 kB512 kB [list of files]
powerpc 212.0 kB424 kB [list of files]
s390 202.4 kB400 kB [list of files]
sparc 199.7 kB408 kB [list of files]