Package: probcons (1.12-4)

[ Source: probcons  ]

PROBabilistic CONSistency-based multiple sequence alignment

Tool for generating multiple alignments of protein sequences. Using a combination of probabilistic modeling and consistency-based alignment techniques, PROBCONS has achieved the highest accuracies of all alignment methods to date. On the BAliBASE benchmark alignment database, alignments produced by PROBCONS show statistically significant improvement over current programs, containing an average of 7% more correctly aligned columns than those of T-Coffee, 11% more correctly aligned columns than those of CLUSTAL W, and 14% more correctly aligned columns than those of DIALIGN. Probcons is published in Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. Genome Research 15: 330-340.

Tags: Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

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• dep: libc6 (>= 2.7-1) [not alpha, ia64]

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• dep: libc6.1 (>= 2.7-1) [alpha, ia64]

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• dep: libgcc1 (>= 1:4.1.1-21) [alpha, amd64, i386, mips, mipsel, sparc]

  GCC support library

  dep: libgcc1 (>= 1:4.2.1) [arm, armel, ia64, powerpc, s390]

• dep: libgcc4 (>= 4.2.1) [hppa]

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• dep: libstdc++6 (>= 4.2.1) [arm, armel, hppa, ia64, powerpc, s390]

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Download probcons

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha	231.0 kB	484.0 kB	[list of files]
amd64	180.8 kB	428.0 kB	[list of files]
arm	202.5 kB	448.0 kB	[list of files]
armel	177.5 kB	404.0 kB	[list of files]
hppa	222.7 kB	440.0 kB	[list of files]
i386	155.1 kB	384.0 kB	[list of files]
ia64	317.3 kB	768.0 kB	[list of files]
mips	221.4 kB	528.0 kB	[list of files]
mipsel	223.0 kB	528.0 kB	[list of files]
powerpc	211.6 kB	428.0 kB	[list of files]
s390	172.3 kB	412.0 kB	[list of files]
sparc	181.6 kB	428.0 kB	[list of files]