Package: mafft (6.240-2)

[ Source: mafft  ]

Multiple alignment program for amino acid or nucleotide sequences

MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods:

 * L-INS-i (probably most accurate; recommended for <200 sequences;
   iterative refinement method incorporating local pairwise alignment
   information),
 * G-INS-i (suitable for sequences of similar lengths; recommended for
   <200 sequences; iterative refinement method incorporating global
   pairwise alignment information),
 * E-INS-i (suitable for sequences containing large unalignable regions;
   recommended for <200 sequences),

and five speed-oriented methods:

 * FFT-NS-i (iterative refinement method; two cycles only),
 * FFT-NS-i (iterative refinement method; max. 1000 iterations),
 * FFT-NS-2 (fast; progressive method),
 * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
   method with a rough guide tree),
 * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
   method with the PartTree algorithm).

Tags: Biology: Clustal/ALN, biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

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• dep: libc6 (>= 2.7-1) [not alpha, ia64]

  GNU C Library: Shared libraries
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• dep: libc6.1 (>= 2.7-1) [alpha, ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• sug: blast2

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Architecture	Package Size	Installed Size	Files
alpha	2,158.7 kB	5,556.0 kB	[list of files]
amd64	2,091.5 kB	4,888.0 kB	[list of files]
arm	1,897.9 kB	4,308.0 kB	[list of files]
armel	2,133.8 kB	4,752.0 kB	[list of files]
hppa	1,985.5 kB	4,492.0 kB	[list of files]
i386	1,661.9 kB	3,884.0 kB	[list of files]
ia64	2,995.8 kB	9,804.0 kB	[list of files]
mips	2,070.6 kB	5,692.0 kB	[list of files]
mipsel	2,074.9 kB	5,692.0 kB	[list of files]
powerpc	2,014.6 kB	4,736.0 kB	[list of files]
s390	1,904.9 kB	4,456.0 kB	[list of files]
sparc	1,753.3 kB	4,292.0 kB	[list of files]