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[ Source: hmmer  ]

Package: hmmer (2.3.2-5)

profile hidden Markov models for protein sequence analysis

HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries.

Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family.

Tags: Biology: Clustal/ALN, biology::format:fasta, Proteins, Field: Biology, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Searching, Works with: Databases, Supports Format: Plain Text

Other Packages Related to hmmer

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.7-1) [not alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libpvm3
    Parallel Virtual Machine - shared libraries
  • rec: biosquid
    utilities for biological sequence analysis
  • sug: hmmer-doc (>= 2.3.2-5)
    profile hidden Markov models for protein sequence analysis (docs)
  • sug: hmmer-pvm (>= 2.3.2-5)
    HMMER programs with PVM (Parallel Virtual Machine) support

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