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Package: exonerate (2.0.0-1 and others)

generic tool for pairwise sequence comparison

Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general.

An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate.

This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Searching, Supports Format: Plain Text

Other Packages Related to exonerate

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.7-1) [not alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libgcc1 (>= 1:4.3) [armel]
    GCC support library
  • dep: libglib2.0-0 (>= 2.12.0)
    The GLib library of C routines
  • sug: wise
    comparison of biopolymers, commonly DNA and protein sequences

Download exonerate

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha 2.0.0-1 3,393.7 kB9736 kB [list of files]
amd64 2.0.0-1 3,250.0 kB9172 kB [list of files]
arm 2.0.0-1 3,363.0 kB9004 kB [list of files]
armel 2.0.0-1 3,516.6 kB9268 kB [list of files]
hppa 2.0.0-1 3,301.5 kB8692 kB [list of files]
i386 2.0.0-1 3,086.5 kB8656 kB [list of files]
ia64 2.0.0-1 4,917.0 kB21040 kB [list of files]
mips 2.0.0-1 3,452.4 kB10828 kB [list of files]
mipsel 2.0.0-1 3,452.6 kB10828 kB [list of files]
powerpc 2.0.0-1 3,123.8 kB9024 kB [list of files]
s390 2.0.0-1 3,366.4 kB8908 kB [list of files]
sparc 2.0.0-1+b1 2,975.6 kB8736 kB [list of files]