Package: autodock (4.0.1-3)

[ Source: autodocksuite  ]

analysis of ligand binding to protein structure

AutoDock is a prime representative of the programs addressing the simulation of the docking of fairly small chemical ligands to rather big protein receptors. Earlier versions had all flexibility in the ligands while the protein was kept rather ridgid. This latest version 4 also allows for a flexibility of selected sidechains of surface residues, i.e., takes the rotamers into account.

The AutoDock program performs the docking of the ligand to a set of grids describing the target protein. AutoGrid pre-calculates these grids.

Tags: Field: Biology, Structural Biology, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Works with: 3D Model

Other Packages Related to autodock

• dep: libc6 (>= 2.7-1) [not alpha, ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libc6.1 (>= 2.7-1) [alpha, ia64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgcc1 (>= 1:4.1.1-21) [not arm, armel, hppa]

  GCC support library

  dep: libgcc1 (>= 1:4.3) [arm, armel]

• dep: libgcc4 (>= 4.1.1-21) [hppa]

  GCC support library

• dep: libstdc++6 (>= 4.1.1-21) [not armel]

  The GNU Standard C++ Library v3

  dep: libstdc++6 (>= 4.3) [armel]

• dep: libunwind7 (>= 0.98.5-6) [ia64]

  A library to determine the call-chain of a program - runtime

• rec: autogrid

  pre-calculate binding of ligands to their receptor

Download autodock

Download for all available architectures

Architecture	Package Size	Installed Size	Files
alpha	1,494.0 kB	1,884.0 kB	[list of files]
amd64	1,468.0 kB	1,820.0 kB	[list of files]
arm	1,479.0 kB	1,816.0 kB	[list of files]
armel	1,475.5 kB	1,812.0 kB	[list of files]
hppa	1,496.3 kB	1,848.0 kB	[list of files]
i386	1,449.7 kB	1,733.0 kB	[list of files]
ia64	1,570.5 kB	2,228.0 kB	[list of files]
mips	1,501.0 kB	1,952.0 kB	[list of files]
mipsel	1,499.5 kB	1,964.0 kB	[list of files]
powerpc	1,476.0 kB	1,820.0 kB	[list of files]
s390	1,460.7 kB	1,792.0 kB	[list of files]
sparc	1,470.4 kB	1,832.0 kB	[list of files]