[ Source: probalign ]
Package: probalign (1.4-2)
Links for probalign
Debian Resources:
Download Source Package probalign:
Maintainers:
External Resources:
- Homepage [cs.njit.edu]
Similar packages:
multiple sequence alignment using partition function posterior probabilities
Probalign uses partition function posterior probability estimates to compute maximum expected accuracy multiple sequence alignments. It performs statistically significantly better than the leading alignment programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0, HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on datasets containing N/C terminal extensions and on datasets with long and heterogeneous length sequences. On heteregeneous length datasets containing repeats Probalign alignment accuracy is 10% and 15% than the other three methods when standard deviation of length is at least 300 and 400.
Other Packages Related to probalign
|
|
|
-
- dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
- 組込用 GNU C ライブラリ: 共有ライブラリ
also a virtual package provided by libc0.1-udeb
-
- dep: libc6 (>= 2.1.3) [i386]
- 組込用 GNU C ライブラリ: 共有ライブラリ
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.13) [s390x]
- dep: libc6 (>= 2.2) [mips, mipsel]
- dep: libc6 (>= 2.2.5) [amd64]
- dep: libc6 (>= 2.4) [armel, armhf, powerpc, s390]
- dep: libc6 (>= 2.6) [sparc]
-
- dep: libc6.1 (>= 2.2) [ia64]
- 組込用 GNU C ライブラリ: 共有ライブラリ
also a virtual package provided by libc6.1-udeb
-
- dep: libgcc1 (>= 1:4.1.1) [not armel, armhf]
- GCC 共有ライブラリ
- dep: libgcc1 (>= 1:4.4.0) [armel, armhf]
-
- dep: libstdc++6 (>= 4.2.1) [not armel, armhf]
- GNU 標準 C++ ライブラリ v3
- dep: libstdc++6 (>= 4.4.0) [armel, armhf]
-
- dep: libunwind7 [ia64]
- プログラムのコールチェーン測定ライブラリ - ランタイム版
Download probalign
| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| amd64 | 75.0 kB | 228.0 kB | [list of files] |
| armel | 65.5 kB | 192.0 kB | [list of files] |
| armhf | 59.6 kB | 141.0 kB | [list of files] |
| i386 | 66.4 kB | 204.0 kB | [list of files] |
| ia64 | 124.2 kB | 360.0 kB | [list of files] |
| kfreebsd-amd64 | 75.4 kB | 198.0 kB | [list of files] |
| kfreebsd-i386 | 66.4 kB | 176.0 kB | [list of files] |
| mips | 78.6 kB | 212.0 kB | [list of files] |
| mipsel | 79.4 kB | 212.0 kB | [list of files] |
| powerpc | 85.5 kB | 212.0 kB | [list of files] |
| s390 | 72.3 kB | 208.0 kB | [list of files] |
| s390x | 83.0 kB | 224.0 kB | [list of files] |
| sparc | 72.7 kB | 204.0 kB | [list of files] |