パッケージ: salmon (1.10.2+ds1-1 など)
wicked-fast transcript quantification from RNA-seq data
Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimates from RNA-seq data. Salmon achieves is accuracy and speed via a number of different innovations, including the use of lightweight alignments (accurate but fast-to-compute proxies for traditional read alignments) and massively-parallel stochastic collapsed variational inference. The result is a versatile tool that fits nicely into many different pipelines. For example, you can choose to make use of the lightweight alignments by providing Salmon with raw sequencing reads, or, if it is more convenient, you can provide Salmon with regular alignments (e.g. computed with your favorite aligner), and it will use the same wicked-fast, state-of-the-art inference algorithm to estimate transcript-level abundances for your experiment.
その他の salmon 関連パッケージ
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- dep: libboost-filesystem1.83.0 (>= 1.83.0)
- C++ でのファイルシステム操作 (ポータブルなパス、ディレクトリの列挙など)
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- dep: libboost-iostreams1.83.0 (>= 1.83.0)
- Boost.Iostreams ライブラリ
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- dep: libboost-program-options1.83.0 (>= 1.83.0)
- C++ 用プログラムオプションライブラリ
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- dep: libc6 (>= 2.34)
- GNU C ライブラリ: 共有ライブラリ
以下のパッケージによって提供される仮想パッケージでもあります: libc6-udeb
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- dep: libgcc-s1 (>= 3.4) [amd64]
- GCC 共有ライブラリ
- dep: libgcc-s1 (>= 4.5) [arm64]
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- dep: libjemalloc2 (>= 5.0.0)
- general-purpose scalable concurrent malloc(3) implementation
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- dep: libjs-sphinxdoc (>= 7.2.2)
- Sphinx ドキュメンテーション用 JavaScript サポート
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- dep: libstaden-read14t64 (>= 1.14.12)
- Staden library for reading and writing DNA sequencing results
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- dep: libstdc++6 (>= 13.1)
- GNU 標準 C++ ライブラリ v3
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- dep: libtbb12 (>= 2021.11.0) [arm64]
- parallelism library for C++ - runtime files
- dep: libtbb12 (>= 2021.4.0) [amd64]
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- dep: libtbbmalloc2 (>= 2017~U7) [amd64]
- parallelism helper library for C++ - runtime files
- dep: libtbbmalloc2 (>= 2021.11.0) [arm64]
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- dep: zlib1g (>= 1:1.1.4)
- 圧縮ライブラリ - ランタイム