Package: boxshade (3.3.1-6 and others)

[ Source: boxshade  ]

belle stampe di allineamenti multisequenza

Boxshade è un programma per creare stampe di bell'aspetto a partire da sequenze proteiche o di DNA multi-allineate. Il programma non fa il reale allineamento e necessita di un file input creato da un programma per allineamenti multipli o creato a mano con strumenti adatti.

Boxshade legge sequenze multiallineate da file PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data e ESEE-save, (limitatamente ad un massimo di 150 sequenze con fino a 10.000 elementi ciascuna). Vari tipi di ombreggiatura possono essere applicati a residui identici/simili. L'output è scritto a schermo o in un file nei seguenti formati: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML.

Tags: Biology: Clustal/ALN, Nucleic Acids, biology::peptidic, field::biology, Field: Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: scope::utility, use::typesetting, Supports Format: works-with-format::html, works-with-format::plaintext, works-with-format::postscript, works-with-format::tex, Works with: Need an extra tag

Other Packages Related to boxshade

• dep: libc0.1 (>= 2.7) [kfreebsd-amd64, kfreebsd-i386]

  libreria C GNU embedded: librerie condivise
  also a virtual package provided by libc0.1-udeb

• dep: libc0.3 (>= 2.7) [hurd-i386]

  libreria C GNU embedded: librerie condivise
  also a virtual package provided by libc0.3-udeb

• dep: libc6 (>= 2.11) [hppa, powerpcspe]

  libreria C GNU embedded: librerie condivise
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.13) [s390x, sh4]

  dep: libc6 (>= 2.5) [avr32]

  dep: libc6 (>= 2.5-5) [m68k]

  dep: libc6 (>= 2.7) [amd64, armel, armhf, i386, mips, mipsel, powerpc, s390, sparc, sparc64]

• dep: libc6.1 (>= 2.7) [alpha, ia64]

  libreria C GNU embedded: librerie condivise
  also a virtual package provided by libc6.1-udeb

• sug: kalign

  allineamenti multipli di sequenza globali e progressivi

  or clustalw

  allineamento globale per sequenze multiple di nucleotidi o peptidi

  or mafft

  programma per allineamenti multipli per sequenze aminoacidiche o nucleotidiche

  or hmmer

  profilamento di modelli di Markov nascosti per analisi di sequenze proteiche

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

• sug: texlive-latex-extra

  TeX Live: LaTeX supplementary packages

• sug: xfig

  strumento per generazione interattiva di figure in X11

Download boxshade

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	3.3.1-6	56.5 kB	198.0 kB	[list of files]
amd64	3.3.1-6	52.1 kB	165.0 kB	[list of files]
armel	3.3.1-6	53.4 kB	163.0 kB	[list of files]
armhf	3.3.1-6	47.7 kB	147.0 kB	[list of files]
avr32 (unofficial port)	3.3.1-4	50.6 kB	244.0 kB	[list of files]
hppa	3.3.1-5	53.9 kB	248.0 kB	[list of files]
hurd-i386	3.3.1-6+b1	48.9 kB	160.0 kB	[list of files]
i386	3.3.1-6	48.8 kB	160.0 kB	[list of files]
ia64	3.3.1-6	68.2 kB	258.0 kB	[list of files]
kfreebsd-amd64	3.3.1-6	52.3 kB	119.0 kB	[list of files]
kfreebsd-i386	3.3.1-6	48.6 kB	114.0 kB	[list of files]
m68k (unofficial port)	3.3.1-4	42.4 kB	228.0 kB	[list of files]
mips	3.3.1-6	48.6 kB	176.0 kB	[list of files]
mipsel	3.3.1-6	49.1 kB	176.0 kB	[list of files]
powerpc	3.3.1-6	50.7 kB	167.0 kB	[list of files]
powerpcspe (unofficial port)	3.3.1-5	50.7 kB	248.0 kB	[list of files]
s390	3.3.1-6	53.8 kB	171.0 kB	[list of files]
s390x	3.3.1-6	55.8 kB	179.0 kB	[list of files]
sh4 (unofficial port)	3.3.1-6	50.5 kB	151.0 kB	[list of files]
sparc	3.3.1-6	49.1 kB	163.0 kB	[list of files]
sparc64 (unofficial port)	3.3.1-6	50.1 kB	115.0 kB	[list of files]