Package: ampliconnoise (1.25-1)

[ Source: ampliconnoise  ]

Programs for the removal of noise from 454 sequenced PCR amplicons

AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts:

Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences

Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct.

Removing Noise From Pyrosequenced Amplicons Christopher Quince, Anders Lanzen, Russell J Davenport and Peter J Turnbaugh BMC Bioinformatics 2011, 12:38doi:10.1186/1471-2105-12-38

Tags: Role: Program

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• dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc6 (>= 2.2.5) [amd64]

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  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.3.6-6~) [i386]

  dep: libc6 (>= 2.4) [armel, armhf, powerpc]

  dep: libc6 (>= 2.6) [sparc]

• dep: libgsl0ldbl (>= 1.9)

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• dep: libopenmpi1.3

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• dep: mafft

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• rec: openmpi-bin

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amd64	411.1 kB	1,156.0 kB	[list of files]
armel	398.0 kB	1,148.0 kB	[list of files]
armhf	360.4 kB	890.0 kB	[list of files]
i386	387.7 kB	1,140.0 kB	[list of files]
kfreebsd-amd64	396.5 kB	1,072.0 kB	[list of files]
kfreebsd-i386	370.9 kB	1,018.0 kB	[list of files]
powerpc	388.3 kB	1,132.0 kB	[list of files]
sparc	373.0 kB	1,092.0 kB	[list of files]