Package: theseus (1.6.2-2)

[ Source: theseus  ]

superimpose macromolecules using maximum likelihood

Theseus is a program that simultaneously superimposes multiple macromolecular structures. Theseus finds the optimal solution to the superposition problem using the method of maximum likelihood. By down-weighting variable regions of the superposition and by correcting for correlations among atoms, the ML superposition method produces very accurate structural alignments.

When macromolecules with different residue sequences are superimposed, other programs and algorithms discard residues that are aligned with gaps. Theseus, however, uses a novel superimposition algorithm that includes all of the data.

Tags: Biology: Proteins, Field: Biology, field::biology:bioinformatics, field::biology:structural, Implemented in: C, User Interface: interface::commandline, role::program, Purpose: Analysing, use::comparing, works-with-format::plaintext

Other Packages Related to theseus

• dep: libc6.1 (>= 2.7)

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• dep: libgsl0ldbl (>= 1.9)

  GNU Scientific Library (GSL) -- library package

• dep: muscle

  Multiple alignment program of protein sequences

• sug: clustlaw

  Package not available

• sug: dialign

  Segment-based multiple sequence alignment

• sug: kalign

  Global and progressive multiple sequence alignment

• sug: mafft

  Multiple alignment program for amino acid or nucleotide sequences

• sug: t-coffee

  Multiple Sequence Alignment

Download theseus

Download for all available architectures

Architecture	Package Size	Installed Size	Files
ia64	1,749.2 kB	3,477.0 kB	[list of files]