Package: boxshade (3.3.1-4)

[ Source: boxshade  ]

Pretty-printing of multiple sequence alignments

Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.

Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Tags: Biology: Clustal/ALN, Nucleic Acids, Proteins, Software Development: Prettyprint, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Typesetting, Supports Format: HTML, Hypertext Markup Language, Plain Text, PostScript, TeX and LaTeX

Other Packages Related to boxshade

• dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc6 (>= 2.7-1) [not ia64, kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libc6.1 (>= 2.7-1) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

• sug: kalign

  Global and progressive multiple sequence alignment

  or clustalw

  global multiple nucleotide or peptide sequence alignment

  or mafft

  Multiple alignment program for amino acid or nucleotide sequences

  or hmmer

  profile hidden Markov models for protein sequence analysis

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

• sug: texlive-latex-extra

  TeX Live: LaTeX supplementary packages

• sug: xfig

  Eszköz ábrák interaktív létrehozásához X11 alatt

Download boxshade

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	51.8 kB	244.0 kB	[list of files]
armel	52.7 kB	244.0 kB	[list of files]
i386	45.8 kB	172.0 kB	[list of files]
ia64	66.7 kB	336.0 kB	[list of files]
kfreebsd-amd64	51.8 kB	170.0 kB	[list of files]
kfreebsd-i386	45.3 kB	158.0 kB	[list of files]
mips	52.3 kB	280.0 kB	[list of files]
mipsel	52.4 kB	280.0 kB	[list of files]
powerpc	51.1 kB	248.0 kB	[list of files]
s390	53.0 kB	248.0 kB	[list of files]
sparc	49.2 kB	240.0 kB	[list of files]