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[ Source: exonerate  ]

Package: exonerate (2.1.0-1 and others)

generic tool for pairwise sequence comparison

Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general.

An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate.

This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb

Other Packages Related to exonerate

  • depends
  • recommends
  • suggests
  • dep: libc0.1 (>= 2.7-1) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.5-5) [m68k]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.7-1) [not alpha, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libgcc1 (>= 1:4.3) [armel]
    GCC támogató programkönyvtár
  • dep: libglib1.2ldbl (>= 1.2.10-18) [m68k]
    The GLib library of C routines
  • dep: libglib2.0-0 (>= 2.12.0) [not m68k]
    The GLib library of C routines
  • sug: wise
    comparison of biopolymers, commonly DNA and protein sequences

Download exonerate

Download for all available architectures
Architecture Version Package Size Installed Size Files
alpha 2.1.0-1 3,346.9 kB9664 kB [list of files]
amd64 2.1.0-1 3,243.8 kB8948 kB [list of files]
arm 2.1.0-1 3,361.1 kB8900 kB [list of files]
armel 2.1.0-1 3,509.7 kB9128 kB [list of files]
hppa 2.1.0-1 3,309.1 kB8556 kB [list of files]
hurd-i386 2.0.0-1 2,888.9 kB8832 kB [list of files]
i386 2.1.0-1 2,871.2 kB8044 kB [list of files]
ia64 2.1.0-1 4,895.3 kB20376 kB [list of files]
kfreebsd-amd64 (unofficial port) 2.1.0-1 3,225.6 kB8814 kB [list of files]
kfreebsd-i386 (unofficial port) 2.1.0-1 2,914.5 kB8332 kB [list of files]
m68k 1.4.0-1 1,948.1 kB6448 kB [list of files]
mips 2.1.0-1 3,479.1 kB10620 kB [list of files]
mipsel 2.1.0-1 3,471.0 kB10624 kB [list of files]
powerpc 2.1.0-1 3,160.7 kB8948 kB [list of files]
s390 2.1.0-1 3,407.0 kB8832 kB [list of files]
sparc 2.1.0-1 2,994.8 kB8592 kB [list of files]