Paketti: tree-ppuzzle (5.3~rc16+dfsg-9 ja muut)

[ Source: tree-puzzle  ]

Parallelized reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

This is the parallelized version of tree-puzzle.

Tagit: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::analysing, use::comparing, Supports Format: Plain Text, Works with: Need an extra tag

Muut pakettiin tree-ppuzzle liittyvät paketit

• dep: libc6 (>= 2.34)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libopenmpi3t64 (>= 4.1.6)

  high performance message passing library -- shared library

• dep: libsprng2

  SPRNG Scalable Parallel RNG library -- library package

• dep: openmpi-bin

  high performance message passing library -- binaries

• rec: tree-puzzle-doc

  Reconstruction of phylogenetic trees by maximum likelihood (doc)

• sug: phylip

  package of programs for inferring phylogenies

• sug: treetool

  Paketti ei saatavilla

Imuroi tree-ppuzzle

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	5.3~rc16+dfsg-9+b1	181.5 kt	433.0 kt	[tiedostoluettelo]
arm64	5.3~rc16+dfsg-9+b1	164.6 kt	428.0 kt	[tiedostoluettelo]
armel	5.3~rc16+dfsg-9+b1	174.2 kt	448.0 kt	[tiedostoluettelo]
armhf	5.3~rc16+dfsg-9+b1	165.2 kt	332.0 kt	[tiedostoluettelo]
i386	5.3~rc16+dfsg-9+b1	193.8 kt	532.0 kt	[tiedostoluettelo]
mips64el	5.3~rc16+dfsg-9+b1	180.0 kt	511.0 kt	[tiedostoluettelo]
ppc64el	5.3~rc16+dfsg-9+b1	191.6 kt	557.0 kt	[tiedostoluettelo]
s390x	5.3~rc16+dfsg-9+b1	193.7 kt	484.0 kt	[tiedostoluettelo]