Paketti: maffilter (1.3.1+dfsg-6)

[ Source: maffilter  ]

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Muut pakettiin maffilter liittyvät paketit

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams -kirjasto

• dep: libbpp-core4t64 (>= 2.4.1)

  Bio++ Core library

• dep: libbpp-phyl-omics3t64 (>= 2.4.1)

  Bio++ Phylogenetics library: genomics components

• dep: libbpp-phyl12t64 (>= 2.4.1)

  Bio++ Phylogenetic library

• dep: libbpp-seq-omics3t64 (>= 2.4.1)

  Bio++ Sequence library: genomics components

• dep: libbpp-seq12t64 (>= 2.4.1)

  Bio++ Sequence library

• dep: libc6 (>= 2.34)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.0) [ei armel, armhf]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 13.1)

  GNU standardi C++ -kirjasto, versio 3

• sug: maffilter-examples

  process genome alignment in the Multiple Alignment Format (example data)

Imuroi maffilter

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
amd64	259.5 kt	1,308.0 kt	[tiedostoluettelo]
arm64	237.9 kt	1,368.0 kt	[tiedostoluettelo]
armel	222.9 kt	1,179.0 kt	[tiedostoluettelo]
armhf	228.8 kt	1,039.0 kt	[tiedostoluettelo]
i386	266.2 kt	1,271.0 kt	[tiedostoluettelo]
mips64el	225.2 kt	1,489.0 kt	[tiedostoluettelo]
ppc64el	254.5 kt	1,432.0 kt	[tiedostoluettelo]
s390x	247.8 kt	1,320.0 kt	[tiedostoluettelo]