Paketti: fastqtl (2.184+v7+dfsg-4 ja muut)

[ Source: fastqtl  ]

Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes

The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs) which are significantly associated with various molecular phenotypes (i.e. expression of known genes, cytosine methylation levels, etc). It performs scans for all possible phenotype-variant pairs in cis (i.e. variants located within a specific window around a phenotype). FastQTL implements a new permutation scheme (Beta approximation) to accurately and rapidly correct for multiple-testing at both the genotype and phenotype levels.

Tagit: Field: Biology, Bioinformatics, User Interface: interface::commandline, role::program, Purpose: Analysing

Muut pakettiin fastqtl liittyvät paketit

• dep: libblas3

  Basic Linear Algebra Reference implementations, shared library

  tai libblas.so.3

  näennäispaketti, jonka toteuttaa libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams -kirjasto

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  program options library for C++

• dep: libc6 (>= 2.34)

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libgcc-s1 (>= 3.0) [ei armel, armhf]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgsl27 (>= 2.7.1)

  GNU Scientific Library (GSL) -- library package

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 13.1)

  GNU standardi C++ -kirjasto, versio 3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: r-mathlib (>= 4.3.2) [armel, armhf]

  GNU R standalone mathematics library

  dep: r-mathlib (>= 4.3.3) [ei armel, armhf]

• rec: r-cran-argparser

  GNU R command-line argument parser

• rec: r-cran-qvalue

  Paketti ei saatavilla

• rec: r-cran-tools

  Paketti ei saatavilla

• sug: fastqtl-doc

  QTL mapper in cis for molecular phenotypes - documentation

Imuroi fastqtl

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	2.184+v7+dfsg-4+b2	232.5 kt	778.0 kt	[tiedostoluettelo]
arm64	2.184+v7+dfsg-4+b2	197.3 kt	726.0 kt	[tiedostoluettelo]
armel	2.184+v7+dfsg-4+b2	185.5 kt	661.0 kt	[tiedostoluettelo]
armhf	2.184+v7+dfsg-4+b2	186.5 kt	493.0 kt	[tiedostoluettelo]
i386	2.184+v7+dfsg-4+b2	230.8 kt	757.0 kt	[tiedostoluettelo]
mips64el	2.184+v7+dfsg-4+b2	194.0 kt	887.0 kt	[tiedostoluettelo]
ppc64el	2.184+v7+dfsg-4+b2	243.0 kt	918.0 kt	[tiedostoluettelo]
s390x	2.184+v7+dfsg-4+b2	217.2 kt	754.0 kt	[tiedostoluettelo]