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[ Source: seaview  ]

Paketti: seaview (1:4.2-1 ja muut) [non-free]

Multiplatform interface for sequence alignment and phylogeny

SeaView reads and writes various file formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE, Newick) of DNA and protein sequences and of phylogenetic trees. Alignments can be manually edited. It drives the programs Muscle or Clustal W for multiple sequence alignment, and also allows to use any external alignment algorithm able to read and write FASTA-formatted files. It computes phylogenetic trees by parsimony using PHYLIP's dnapars/protpars algorithm, by distance with NJ or BioNJ algorithms on a variety of evolutionary distances, or by maximum likelihood using the program PhyML 3.0. SeaView draws phylogenetic trees on screen or PostScript files, and allows to download sequences from EMBL/GenBank/UniProt using the Internet.

Muut pakettiin seaview liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
    GNU-C-kirjasto: jaetut kirjastot
    myös näennäispaketti, jonka toteuttaa libc0.3-udeb
  • dep: libc6 [powerpc]
    GNU-C-kirjasto: jaetut kirjastot
    myös näennäispaketti, jonka toteuttaa libc6-udeb
    dep: libc6 (>= 2.3) [amd64, hppa, i386]
    dep: libc6 (>= 2.4) [s390]
    dep: libc6 (>= 2.6) [sparc]
    dep: libc6 (>= 2.7-1) [armel, mips, mipsel]
  • dep: libc6.1 (>= 2.4) [alpha]
    GNU-C-kirjasto: jaetut kirjastot
    myös näennäispaketti, jonka toteuttaa libc6.1-udeb
    dep: libc6.1 (>= 2.7-1) [ia64]
  • dep: libfltk1.1 (>= 1.1.6)
    Fast Light Toolkit - shared libraries
  • dep: libfontconfig1 (>= 2.4.0) [ei armel, hurd-i386, ia64, mips, mipsel]
    generic font configuration library - runtime
  • dep: libgcc1 (>= 1:4.1.1) [ei armel, hppa, hurd-i386]
    GCC:n apukirjasto
    dep: libgcc1 (>= 1:4.3) [armel]
    dep: libgcc1 (>= 4.2.1) [hurd-i386]
  • dep: libgcc4 (>= 4.1.1) [hppa]
    GCC:n apukirjasto
  • dep: libjpeg62
    The Independent JPEG Group's JPEG runtime library
  • dep: libpng12-0 (>= 1.2.13-4)
    PNG library - runtime
  • dep: libstdc++6 (>= 4.1.1) [ei armel]
    GNU Standard C++ -kirjasto, versio 3
    dep: libstdc++6 (>= 4.3) [armel]
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
    A library to determine the call-chain of a program - runtime
  • dep: libx11-6
    X11 client-side library
  • dep: libxext6 [ei armel, hurd-i386, ia64, mips, mipsel]
    X11 miscellaneous extension library
  • dep: libxft2 (>> 2.1.1) [ei armel, hurd-i386, ia64, mips, mipsel]
    FreeType-based font drawing library for X
  • dep: zlib1g (>= 1:1.1.4)
    pakkauskirjaston ajonaikaistiedostot
  • rec: clustalw [ei armel, hurd-i386, ia64, mips, mipsel]
    global multiple nucleotide or peptide sequence alignment
  • rec: muscle [ei armel, hurd-i386, ia64, mips, mipsel]
    Multiple alignment program of protein sequences
  • rec: phyml [ei armel, hurd-i386, ia64, mips, mipsel]
    Phylogenetic estimation using Maximum Likelihood
  • rec: xterm [armel, hurd-i386, ia64, mips, mipsel]
    X-pääte-emulaattori
  • sug: clustalw
    global multiple nucleotide or peptide sequence alignment
  • sug: muscle
    Multiple alignment program of protein sequences

Imuroi seaview

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Versio Paketin koko Koko asennettuna Tiedostot
alpha 1:4.2-1 313.9 kt828 kt [tiedostoluettelo]
amd64 1:4.2-1 264.9 kt684 kt [tiedostoluettelo]
armel 1:3.2-1 170.3 kt464 kt [tiedostoluettelo]
hppa 1:4.2-1 288.3 kt700 kt [tiedostoluettelo]
hurd-i386 1:3.2-1 177.3 kt480 kt [tiedostoluettelo]
i386 1:4.2-1 247.0 kt648 kt [tiedostoluettelo]
ia64 1:3.2-1 261.8 kt768 kt [tiedostoluettelo]
mips 1:3.2-1 190.2 kt576 kt [tiedostoluettelo]
mipsel 1:3.2-1 190.1 kt576 kt [tiedostoluettelo]
powerpc 1:4.1-1 274.5 kt712 kt [tiedostoluettelo]
s390 1:4.2-1 263.5 kt672 kt [tiedostoluettelo]
sparc 1:4.2-1 248.1 kt648 kt [tiedostoluettelo]