Imuroi lähdekoodipaketti exonerate:
Exonerate allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. Much of the functionality of the Wise dynamic programming suite was reimplemented in C for better efficiency. Exonerate is an intrinsic component of the building of the Ensembl genome databases, providing similarity scores between RNA and DNA sequences and thus determining splice variants and coding sequences in general.
An In-silico PCR Experiment Simulation System (see the ipcress man page) is packaged with exonerate.
This package also comes with a selection of utilities for performing simple manipulations quickly on fasta files beyond 2Gb
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| Arkkitehtuuri | Versio | Paketin koko | Koko asennettuna | Tiedostot |
|---|---|---|---|---|
| alpha | 2.0.0-1 | 3,393.7 kt | 9736 kt | [tiedostoluettelo] |
| amd64 | 2.0.0-1 | 3,250.0 kt | 9172 kt | [tiedostoluettelo] |
| arm | 2.0.0-1 | 3,363.0 kt | 9004 kt | [tiedostoluettelo] |
| armel | 2.0.0-1 | 3,516.6 kt | 9268 kt | [tiedostoluettelo] |
| hppa | 2.0.0-1 | 3,301.5 kt | 8692 kt | [tiedostoluettelo] |
| hurd-i386 | 2.0.0-1 | 2,888.9 kt | 8832 kt | [tiedostoluettelo] |
| i386 | 2.0.0-1 | 3,086.5 kt | 8656 kt | [tiedostoluettelo] |
| ia64 | 2.0.0-1 | 4,917.0 kt | 21040 kt | [tiedostoluettelo] |
| kfreebsd-amd64 (epävirallinen siirros) | 2.0.0-1 | 3,249.3 kt | 9028 kt | [tiedostoluettelo] |
| kfreebsd-i386 (epävirallinen siirros) | 2.0.0-1 | 2,890.9 kt | 8682 kt | [tiedostoluettelo] |
| m68k | 1.4.0-1 | 1,948.1 kt | 6448 kt | [tiedostoluettelo] |
| mips | 2.0.0-1 | 3,452.4 kt | 10828 kt | [tiedostoluettelo] |
| mipsel | 2.0.0-1 | 3,452.6 kt | 10828 kt | [tiedostoluettelo] |
| powerpc | 2.0.0-1 | 3,123.8 kt | 9024 kt | [tiedostoluettelo] |
| s390 | 2.0.0-1 | 3,366.4 kt | 8908 kt | [tiedostoluettelo] |
| sparc | 2.0.0-1+b1 | 2,975.6 kt | 8736 kt | [tiedostoluettelo] |