Paketti: boxshade (3.3.1-3)

[ Source: boxshade  ]

Pretty-printing of multiple sequence alignments

Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.

Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Tagit: Biology: Clustal/ALN, Nucleic Acids, Proteins, Software Development: Prettyprint, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Typesetting, Supports Format: HTML, Hypertext Markup Language, Plain Text, PostScript, TeX and LaTeX

Muut pakettiin boxshade liittyvät paketit

• dep: libc6 (>= 2.7-1) [ei alpha, ia64]

  GNU C Library: Shared libraries
  myös näennäispaketti, jonka toteuttaa libc6-udeb

• dep: libc6.1 (>= 2.7-1) [alpha, ia64]

  GNU C Library: Shared libraries
  myös näennäispaketti, jonka toteuttaa libc6.1-udeb

• sug: kalign

  Global and progressive multiple sequence alignment

  tai clustalw

  global multiple nucleotide or peptide sequence alignment

  tai mafft

  Multiple alignment program for amino acid or nucleotide sequences

  tai hmmer

  profile hidden Markov models for protein sequence analysis

• sug: seaview

  Multiple sequence alignment editor

• sug: texlive-latex-extra

  TeX Live: LaTeX supplementary packages

• sug: xfig

  Väline kuvien interaktiiviseen tuotantoon X11-ympäristössä

Imuroi boxshade

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Paketin koko	Koko asennettuna	Tiedostot
alpha	54.8 kt	268.0 kt	[tiedostoluettelo]
amd64	51.0 kt	244.0 kt	[tiedostoluettelo]
arm	49.2 kt	236.0 kt	[tiedostoluettelo]
armel	51.4 kt	240.0 kt	[tiedostoluettelo]
hppa	53.1 kt	248.0 kt	[tiedostoluettelo]
i386	44.9 kt	232.0 kt	[tiedostoluettelo]
ia64	65.8 kt	332.0 kt	[tiedostoluettelo]
mips	52.2 kt	284.0 kt	[tiedostoluettelo]
mipsel	52.4 kt	284.0 kt	[tiedostoluettelo]
powerpc	50.5 kt	248.0 kt	[tiedostoluettelo]
s390	51.6 kt	248.0 kt	[tiedostoluettelo]
sparc	48.2 kt	240.0 kt	[tiedostoluettelo]