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[ Source: boxshade  ]

Paketti: boxshade (3.3.1-3)

Pretty-printing of multiple sequence alignments

Boxshade is a program for creating good looking printouts from multiple-aligned protein or DNA sequences. The program does not perform the alignment by itself and requires as input a file that was created by a multiple alignment program or manually edited with respective tools.

Boxshade reads multiple-aligned sequences from either PILEUP-MSF, CLUSTAL-ALN, MALIGNED-data and ESEE-save files (limited to a maximum of 150 sequences with up to 10000 elements each). Various kinds of shading can be applied to identical/similar residues. Output is written to screen or to a file in the following formats: ANSI/VT100, PS/EPS, RTF, HPGL, ReGIS, LJ250-printer, ASCII, xFIG, PICT, HTML

Tagit: Biology: Clustal/ALN, Nucleic Acids, Proteins, Software Development: Prettyprint, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Typesetting, Supports Format: HTML, Hypertext Markup Language, Plain Text, PostScript, TeX and LaTeX

Muut pakettiin boxshade liittyvät paketit

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.7-1) [ei alpha, ia64]
    GNU-C-kirjasto: jaetut kirjastot
    myös näennäispaketti, jonka toteuttaa libc6-udeb
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU-C-kirjasto: jaetut kirjastot
    myös näennäispaketti, jonka toteuttaa libc6.1-udeb
  • sug: kalign
    Global and progressive multiple sequence alignment
    tai clustalw
    global multiple nucleotide or peptide sequence alignment
    tai mafft
    Multiple alignment program for amino acid or nucleotide sequences
    tai hmmer
    profile hidden Markov models for protein sequence analysis
  • sug: seaview
    Multiple sequence alignment editor
  • sug: texlive-latex-extra
    TeX Live: LaTeX supplementary packages
  • sug: xfig
    Väline kuvien interaktiiviseen tuotantoon X11-ympäristössä

Imuroi boxshade

Imurointi kaikille saataville arkkitehtuureille
Arkkitehtuuri Paketin koko Koko asennettuna Tiedostot
alpha 54.8 kt268 kt [tiedostoluettelo]
amd64 51.0 kt244 kt [tiedostoluettelo]
arm 49.2 kt236 kt [tiedostoluettelo]
armel 51.4 kt240 kt [tiedostoluettelo]
hppa 53.1 kt248 kt [tiedostoluettelo]
i386 44.9 kt232 kt [tiedostoluettelo]
ia64 65.8 kt332 kt [tiedostoluettelo]
mips 52.2 kt284 kt [tiedostoluettelo]
mipsel 52.4 kt284 kt [tiedostoluettelo]
powerpc 50.5 kt248 kt [tiedostoluettelo]
s390 51.6 kt248 kt [tiedostoluettelo]
sparc 48.2 kt240 kt [tiedostoluettelo]