Download Source Package infernal:
Warning: This package is from the experimental distribution. That means it is likely unstable or buggy, and it may even cause data loss. Please be sure to consult the changelog and other possible documentation before using it.
Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. It is an implementation of a special case of profile stochastic context-free grammars called covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and RNA secondary structure consensus, so in many cases, it is more capable of identifying RNA homologs that conserve their secondary structure more than their primary sequence.
The tool is an integral component of the Rfam database.
Users of this package should cite: "Query-Dependent Banding (QDB) for Faster RNA Similarity Searches." E. P. Nawrocki, S. R. Eddy. PLoS Comput. Biol., 3:e56, 2007.
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| Architecture | Package Size | Installed Size | Files |
|---|---|---|---|
| alpha | 2,276.9 kB | 5080 kB | no current information |
| amd64 | 1,985.9 kB | 4180 kB | no current information |
| arm | 1,811.6 kB | 3644 kB | no current information |
| hppa | 1,979.3 kB | 3848 kB | no current information |
| i386 | 1,831.3 kB | 3739 kB | no current information |
| ia64 | 3,023.1 kB | 8316 kB | no current information |
| kfreebsd-amd64 (unofficial port) | 1,986.5 kB | 4216 kB | no current information |
| kfreebsd-i386 (unofficial port) | 1,785.2 kB | 3720 kB | no current information |
| mips | 2,078.8 kB | 5224 kB | no current information |
| powerpc | 1,949.9 kB | 4092 kB | no current information |
| s390 | 1,902.1 kB | 3908 kB | no current information |
| sparc | 1,755.5 kB | 3728 kB | no current information |