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Package: probcons (1.11-1)

PROBabilistic CONSistency-based multiple sequence alignment

Tool for generating multiple alignments of protein sequences. Using a combination of probabilistic modeling and consistency-based alignment techniques, PROBCONS has achieved the highest accuracies of all alignment methods to date. On the BAliBASE benchmark alignment database, alignments produced by PROBCONS show statistically significant improvement over current programs, containing an average of 7% more correctly aligned columns than those of T-Coffee, 11% more correctly aligned columns than those of CLUSTAL W, and 14% more correctly aligned columns than those of DIALIGN. Probcons is published in Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. Genome Research 15: 330-340. 

 Homepage: http://probcons.stanford.edu/

Tags: Field: Biology, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Supports Format: Plain Text

Other Packages Related to probcons

  • depends
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  • dep: libc6 (>= 2.3.5-1) [not alpha, i386, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.3.6-6) [i386]
  • dep: libc6.1 (>= 2.3.5-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libgcc1 (>= 1:4.1.1-12) [not hppa]
    GCC support library
  • dep: libgcc4 (>= 4.1.1-12) [hppa]
    GCC support library
  • dep: libstdc++6 (>= 4.1.1-12)
    The GNU Standard C++ Library v3
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
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Download probcons

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 221.7 kB484 kB [list of files]
amd64 177.6 kB432 kB [list of files]
arm 199.1 kB444 kB [list of files]
hppa 212.4 kB432 kB [list of files]
i386 153.8 kB388 kB [list of files]
ia64 310.9 kB784 kB [list of files]
mips 207.9 kB524 kB [list of files]
mipsel 209.6 kB524 kB [list of files]
powerpc 204.6 kB424 kB [list of files]
s390 166.7 kB412 kB [list of files]
sparc 172.5 kB416 kB [list of files]