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[ Source: amap-align  ]

Package: amap-align (2.0-1)

Protein multiple alignment by sequence annealing

AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation. 

 Homepage: http://bio.math.berkeley.edu/amap/

Tags: Field: Biology, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Supports Format: Plain Text

Other Packages Related to amap-align

  • depends
  • recommends
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  • dep: libc6 (>= 2.3.5-1) [not alpha, i386, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.3.6-6) [i386]
  • dep: libc6.1 (>= 2.3.5-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb
  • dep: libgcc1 (>= 1:4.1.0) [not hppa]
    GCC support library
  • dep: libgcc4 (>= 4.1.0) [hppa]
    GCC support library
  • dep: libstdc++6 (>= 4.1.0)
    The GNU Standard C++ Library v3
  • dep: libunwind7 (>= 0.98.5-6) [ia64]
    A library to determine the call-chain of a program - runtime

Download amap-align

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 132.8 kB308 kB [list of files]
amd64 106.4 kB272 kB [list of files]
arm 103.9 kB288 kB [list of files]
hppa 126.1 kB276 kB [list of files]
i386 95.2 kB252 kB [list of files]
ia64 185.4 kB484 kB [list of files]
mips 120.8 kB324 kB [list of files]
mipsel 121.6 kB324 kB [list of files]
powerpc 118.7 kB268 kB [list of files]
s390 97.2 kB260 kB [list of files]
sparc 100.8 kB264 kB [list of files]