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Package: tree-puzzle (5.2-2)

[Biology] Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

URL: http://www.tree-puzzle.de

Other Packages Related to tree-puzzle

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.3.5-1)
    GNU C Library: Shared libraries
  • rec: tree-puzzle-doc
    [Biology] Reconstruction of phylogenetic trees by maximum likelihood
  • sug: phylip
    [Biology] A package of programs for inferring phylogenies
  • sug: treetool
    Package not available

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m68k 180.4 kB396 kB [list of files]