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[ Source: tigr-glimmer  ]

Package: tigr-glimmer (2.13-1 and others)

[Biology] Gene detection in archea and bacteria

Developed by the TIGR institute this software detects coding sequences in bacteria and archea.

Glimmer is a system for finding genes in microbial DNA, especially the genomes of bacteria and archaea. Glimmer (Gene Locator and Interpolated Markov Modeler) uses interpolated Markov models (IMMs) to identify the coding regions and distinguish them from noncoding DNA. 

 Homepage: http://www.tigr.org/software/glimmer/

Tags: Field: Biology, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Searching

Other Packages Related to tigr-glimmer

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.3.5-1)
    GNU C Library: Shared libraries
  • dep: libgcc2 (>= 4.1.1-12)
    GCC support library
  • dep: libstdc++6 (>= 4.1.1-12)
    The GNU Standard C++ Library v3

Download tigr-glimmer

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Architecture Version Package Size Installed Size Files
m68k 2.13-1+b1 111.3 kB368 kB [list of files]