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[ Source: t-coffee  ]

Package: t-coffee (2.50-1)

[Biology] Multiple Sequence Alignment

T-Coffee is a multiple sequence alignment package. Given a set of sequences (Proteins or DNA), T-Coffee generates a multiple sequence alignment. Version 2.00 and higher can mix sequences and structures.

T-Coffee allows the combination of a collection of multiple/pairwise, global or local alignments into a single model. It also allows to estimate the level of consistency of each position within the new alignment with the rest of the alignments. See the pre-print for more information 

 Homepage: http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html

Tags: Field: Biology

Other Packages Related to t-coffee

  • depends
  • recommends
  • suggests
  • dep: libc6 (>= 2.3.2.ds1-21)
    GNU C Library: Shared libraries
  • rec: boxshade
    [Biology] Pretty-printing of multiple sequence alignments
    or texshade
    Package not available
  • sug: clustalw
    [Biology] Global multiple nucleotide or peptide sequence alignment
  • sug: muscle
    [Biology] multiple alignment program of protein sequences
  • sug: seaview
    [Biology] Multiple sequence alignment editor

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m68k 1,200.0 kB1808 kB [list of files]