Package: amap-align (2.0-1)

Protein multiple alignment by sequence annealing

AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation.

 Homepage: http://bio.math.berkeley.edu/amap/

Tags: Field: Biology, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Supports Format: Plain Text