Package: hmmer (3.0-3 and others)

Links for hmmer

Debian Resources:

Download Source Package hmmer:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Matthew Vernon (QA Page)
Nelson A. de Oliveira (QA Page)
Andreas Tille (QA Page)
Charles Plessy (QA Page)
Eric Talevich (QA Page)

External Resources:

Homepage [hmmer.janelia.org]

Similar packages:

Modelos de Markov de perfil oculto para el análisis de secuencias de proteínas

HMMER es una implementación de los métodos del modelo de Markov de perfiles ocultos para búsquedas en bases de datos de secuencias biológicas usando alineamientos múltiples como consultas.

Dado un alineamiento múltiple de secuencias como entrada, HMMER construye un modelo estadístico llamado modelo oculto de Markov que se puede usar como una consulta a una base de datos de secuencias para encontrar (y/o alinear) homólogos adicionales de la familia de secuencias.

Tags: Biology: Clustal/ALN, biology::format:fasta, Proteins, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Searching, Works with: Databases, Supports Format: Plain Text

Other Packages Related to hmmer

depends

recommends

suggests

dep: hurd [hurd-i386]

GNU Hurd
also a virtual package provided by hurd-udeb
dep: libc0.1 (>= 2.3.2) [kfreebsd-amd64, kfreebsd-i386]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc0.1-udeb
dep: libc0.3 (>= 2.11) [hurd-i386]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc0.3-udeb
dep: libc6 (>= 2.11) [hppa, powerpcspe, sh4]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.13) [s390x]

dep: libc6 (>= 2.3.2) [amd64, sparc64]

dep: libc6 (>= 2.3.6-6~) [i386]

dep: libc6 (>= 2.4) [armel, armhf, mips, mipsel, powerpc, s390]

dep: libc6 (>= 2.5-5) [m68k]

dep: libc6 (>= 2.6) [sparc]
dep: libc6.1 (>= 2.3.2) [ia64]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.4) [alpha]
dep: libgcc1 (>= 1:4.4.0) [armel, armhf]

GCC support library
dep: libpvm3 [m68k]

Parallel Virtual Machine - shared libraries

rec: biosquid

utilidades para el análisis de secuencias biológicas

sug: hmmer-doc (>= 2.3.2-5) [m68k]

profile hidden Markov models for protein sequence analysis (docs)

sug: hmmer-doc (>= 3.0-3) [not m68k]
sug: hmmer-pvm (>= 2.3.2-5) [m68k]

Programas de HMMER con compatibilidad con PVM («Parallel Virtual Machine», Máquina Virtual Paralela)

Download hmmer

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha	3.0-3	2,251.2 kB	5,360.0 kB	[list of files]
amd64	3.0-3	2,164.3 kB	4,604.0 kB	[list of files]
armel	3.0-3	1,916.3 kB	4,016.0 kB	[list of files]
armhf	3.0-3	1,651.4 kB	2,634.0 kB	[list of files]
hppa	3.0-3	2,061.7 kB	4,172.0 kB	[list of files]
hurd-i386	3.0-3	1,997.2 kB	4,308.0 kB	[list of files]
i386	3.0-3	1,995.0 kB	4,308.0 kB	[list of files]
ia64	3.0-3	3,124.3 kB	9,160.0 kB	[list of files]
kfreebsd-amd64	3.0-3	2,162.5 kB	4,814.0 kB	[list of files]
kfreebsd-i386	3.0-3	1,996.4 kB	4,478.0 kB	[list of files]
m68k (unofficial port)	2.3.2-5	905.1 kB	2,080.0 kB	[list of files]
mips	3.0-3	2,095.4 kB	5,348.0 kB	[list of files]
mipsel	3.0-3	2,108.8 kB	5,360.0 kB	[list of files]
powerpc	3.0-3	1,992.4 kB	4,496.0 kB	[list of files]
powerpcspe (unofficial port)	3.0-3	2,027.9 kB	4,380.0 kB	[list of files]
s390	3.0-3	1,959.9 kB	4,184.0 kB	[list of files]
s390x	3.0-3	2,032.8 kB	4,585.0 kB	[list of files]
sh4 (unofficial port)	3.0-3	2,074.9 kB	4,036.0 kB	[list of files]
sparc	3.0-3	1,833.3 kB	4,028.0 kB	[list of files]
sparc64 (unofficial port)	3.0-3	1,835.2 kB	4,008.0 kB	[list of files]