Package: sibsim4 (0.20-1)

[ Source: sibsim4  ]

align expressed RNA sequences on a DNA template

The SIBsim4 project is based on sim4, which is a program designed to align an expressed DNA sequence with a genomic sequence, allowing for introns. SIBsim4 is a fairly extensive rewrite of the original code with the following goals:

 * speed improvement;
 * allow large, chromosome scale, DNA sequences to be used;
 * provide more detailed output about splice types;
 * provide more detailed output about polyA sites;
 * misc code cleanups and fixes.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, interface::commandline, Role: Program, Scope: Utility, Purpose: use::TODO, use::comparing, Searching, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Need an extra tag

Other Packages Related to sibsim4

• dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc6 (>= 2.13) [s390x]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.3) [amd64, i386, mips, mipsel]

  dep: libc6 (>= 2.4) [armel, armhf, powerpc, s390]

  dep: libc6 (>= 2.6) [sparc]

• dep: libc6.1 (>= 2.3) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

Download sibsim4

Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	34.0 kB	108.0 kB	[list of files]
armel	34.0 kB	104.0 kB	[list of files]
armhf	30.2 kB	79.0 kB	[list of files]
i386	32.1 kB	96.0 kB	[list of files]
ia64	49.6 kB	156.0 kB	[list of files]
kfreebsd-amd64	34.0 kB	82.0 kB	[list of files]
kfreebsd-i386	32.0 kB	74.0 kB	[list of files]
mips	35.2 kB	116.0 kB	[list of files]
mipsel	35.5 kB	112.0 kB	[list of files]
powerpc	34.5 kB	108.0 kB	[list of files]
s390	34.6 kB	108.0 kB	[list of files]
s390x	37.0 kB	104.0 kB	[list of files]
sparc	32.2 kB	104.0 kB	[list of files]