Package: dialign-tx (1.0.2-2)

[ Source: dialign-t  ]

Segment-based multiple sequence alignment

DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities.

Tags: Field: Biology, Bioinformatics, Implemented in: implemented-in::c, role::program, Scope: Utility, Purpose: Comparing, Supports Format: works-with-format::TODO, works-with-format::plaintext, Works with: Need an extra tag

Other Packages Related to dialign-tx

• dep: dialign-tx-data (= 1.0.2-2)

  Common data files for dialign-tx

• dep: libc0.1 (>= 2.7) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc6 (>= 2.13) [s390x]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.7) [not ia64, kfreebsd-amd64, kfreebsd-i386, s390x]

• dep: libc6.1 (>= 2.7) [ia64]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

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Architecture	Package Size	Installed Size	Files
amd64	57.6 kB	164.0 kB	[list of files]
armel	58.5 kB	160.0 kB	[list of files]
armhf	47.2 kB	108.0 kB	[list of files]
i386	51.9 kB	152.0 kB	[list of files]
ia64	85.6 kB	296.0 kB	[list of files]
kfreebsd-amd64	57.8 kB	134.0 kB	[list of files]
kfreebsd-i386	51.8 kB	122.0 kB	[list of files]
mips	61.0 kB	184.0 kB	[list of files]
mipsel	61.5 kB	184.0 kB	[list of files]
powerpc	60.4 kB	164.0 kB	[list of files]
s390	56.5 kB	160.0 kB	[list of files]
s390x	57.3 kB	153.0 kB	[list of files]
sparc	57.4 kB	164.0 kB	[list of files]