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Package: dialign-tx (1.0.2-1)

Segment-based multiple sequence alignment

DIALIGN-TX is a command line tool to perform multiple alignment of protein or DNA sequences. It is a complete reimplementation of the segment-base approach including several new improvements and heuristics that significantly enhance the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T. For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that favours chains of low-scoring local alignments over isolated high-scoring fragments. For multiple alignment, DIALIGN-TX uses an improved greedy procedure that is less sensitive to spurious local sequence similarities.

DIALIGN-TX has been published in Amarendran R. Subramanian, Michael Kaufmann, Burkhard Morgenstern: Improvement of the segment-based approach for multiple sequence alignment by combining greedy and progressive alignment strategies, Algorithms for Molecular Biology 3:6, 2008

Tags: Field: Biology, Bioinformatics, Implemented in: C, Role: Program, Scope: Utility, Purpose: Comparing, Supports Format: Plain Text

Other Packages Related to dialign-tx

  • depends
  • recommends
  • suggests
  • dep: dialign-tx-data (= 1.0.2-1)
    Common data files for dialign-tx
  • dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.1-udeb
  • dep: libc0.3 (>= 2.7-1) [hurd-i386]
    GNU C Library: Shared libraries
    also a virtual package provided by libc0.3-udeb
  • dep: libc6 (>= 2.5) [avr32]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6-udeb
    dep: libc6 (>= 2.5-5) [m68k]
    dep: libc6 (>= 2.7-1) [not alpha, avr32, hurd-i386, ia64, kfreebsd-amd64, kfreebsd-i386, m68k]
  • dep: libc6.1 (>= 2.7-1) [alpha, ia64]
    GNU C Library: Shared libraries
    also a virtual package provided by libc6.1-udeb

Download dialign-tx

Download for all available architectures
Architecture Package Size Installed Size Files
alpha 65.0 kB192 kB [list of files]
amd64 56.4 kB164 kB [list of files]
armel 57.7 kB160 kB [list of files]
avr32 (unofficial port) 61.5 kB160 kB [list of files]
hppa 59.2 kB156 kB [list of files]
hurd-i386 50.8 kB152 kB [list of files]
i386 51.4 kB152 kB [list of files]
ia64 82.7 kB288 kB [list of files]
kfreebsd-amd64 56.4 kB134 kB [list of files]
kfreebsd-i386 51.3 kB122 kB [list of files]
m68k (unofficial port) 44.2 kB148 kB [list of files]
mips 57.5 kB184 kB [list of files]
mipsel 57.7 kB184 kB [list of files]
powerpc 59.3 kB164 kB [list of files]
s390 55.3 kB156 kB [list of files]
sparc 55.5 kB164 kB [list of files]