Package: hmmer (3.0-3 and others)

Links for hmmer

Debian Resources:

Download Source Package hmmer:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Matthew Vernon (QA Page)
Nelson A. de Oliveira (QA Page)
Andreas Tille (QA Page)
Charles Plessy (QA Page)
Eric Talevich (QA Page)

External Resources:

Homepage [hmmer.janelia.org]

Similar packages:

Markovy modely pro analýzu proteinových sekvencí

HMMER je implementací Markovy metody pro hledání biologických sekvencí pomocí vícenásobných sekvenčních uspořádání.

Na základě vstupu, HMMER vytvoří statistický model nazývaný "skrytý Markovův model", který je možno použití pro vytvoření dotazů do databáze sekvencí a pro nalezení (a/nebo uspořádání) dodatečných souhlasných rodin.

Tags: Biology: Clustal/ALN, biology::format:fasta, Proteins, Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Searching, Works with: Databases, Supports Format: Plain Text

Other Packages Related to hmmer

depends

recommends

suggests

dep: hurd [hurd-i386]

GNU Hurd
also a virtual package provided by hurd-udeb
dep: libc0.1 (>= 2.3.2) [kfreebsd-amd64, kfreebsd-i386]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc0.1-udeb
dep: libc0.3 (>= 2.11) [hurd-i386]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc0.3-udeb
dep: libc6 (>= 2.11) [hppa, powerpcspe, sh4]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb

dep: libc6 (>= 2.13) [s390x]

dep: libc6 (>= 2.3.2) [amd64, sparc64]

dep: libc6 (>= 2.3.6-6~) [i386]

dep: libc6 (>= 2.4) [armel, armhf, mips, mipsel, powerpc, s390]

dep: libc6 (>= 2.5-5) [m68k]

dep: libc6 (>= 2.6) [sparc]
dep: libc6.1 (>= 2.3.2) [ia64]

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb

dep: libc6.1 (>= 2.4) [alpha]
dep: libgcc1 (>= 1:4.4.0) [armel, armhf]

GCC support library
dep: libpvm3 [m68k]

Parallel Virtual Machine - shared libraries

rec: biosquid

Nástroje pro biologickou sekvenční analýzu

sug: hmmer-doc (>= 2.3.2-5) [m68k]

profile hidden Markov models for protein sequence analysis (docs)

sug: hmmer-doc (>= 3.0-3) [not m68k]
sug: hmmer-pvm (>= 2.3.2-5) [m68k]

HMMER programs with PVM (Parallel Virtual Machine) support

Download hmmer

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha	3.0-3	2,251.2 kB	5,360.0 kB	[list of files]
amd64	3.0-3	2,164.3 kB	4,604.0 kB	[list of files]
armel	3.0-3	1,916.3 kB	4,016.0 kB	[list of files]
armhf	3.0-3	1,651.4 kB	2,634.0 kB	[list of files]
hppa	3.0-3	2,061.7 kB	4,172.0 kB	[list of files]
hurd-i386	3.0-3	1,997.2 kB	4,308.0 kB	[list of files]
i386	3.0-3	1,995.0 kB	4,308.0 kB	[list of files]
ia64	3.0-3	3,124.3 kB	9,160.0 kB	[list of files]
kfreebsd-amd64	3.0-3	2,162.5 kB	4,814.0 kB	[list of files]
kfreebsd-i386	3.0-3	1,996.4 kB	4,478.0 kB	[list of files]
m68k (unofficial port)	2.3.2-5	905.1 kB	2,080.0 kB	[list of files]
mips	3.0-3	2,095.4 kB	5,348.0 kB	[list of files]
mipsel	3.0-3	2,108.8 kB	5,360.0 kB	[list of files]
powerpc	3.0-3	1,992.4 kB	4,496.0 kB	[list of files]
powerpcspe (unofficial port)	3.0-3	2,027.9 kB	4,380.0 kB	[list of files]
s390	3.0-3	1,959.9 kB	4,184.0 kB	[list of files]
s390x	3.0-3	2,032.8 kB	4,585.0 kB	[list of files]
sh4 (unofficial port)	3.0-3	2,074.9 kB	4,036.0 kB	[list of files]
sparc	3.0-3	1,833.3 kB	4,028.0 kB	[list of files]
sparc64 (unofficial port)	3.0-3	1,835.2 kB	4,008.0 kB	[list of files]