Software Packages in "lenny", Subsection science
- abinit (5.3.4.dfsg-3+b1 [mips, mipsel], 5.3.4.dfsg-3 [alpha, amd64, arm, armel, hppa, i386, ia64, powerpc, s390, sparc])
- A package for electronic structure calculations
- achilles (2-8)
- An artificial life and evolution simulator
- adun.app (0.8.2-1+b1)
- Molecular Simulator for GNUstep
- aeskulap (0.2.2b1-2)
- medical image viewer and DICOM network client
- altree (1.0.1-3)
- program to perform phylogeny based analyses
- altree-examples (1.0.1-3)
- example files for ALTree
- amap-align (2.2-1)
- Protein multiple alignment by sequence annealing
- apbs (1.0.0-2)
- Adaptive Poisson Boltzmann Solver
- astronomical-almanac (5.6-2+b1 [sparc], 5.6-2 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390])
- astronomical almanac - calculate planet and star positions
- autodock (4.0.1-3)
- analysis of ligand binding to protein structure
- autogrid (4.0.1-3)
- pre-calculate binding of ligands to their receptor
- avce00 (2.0.0-2)
- Tools for conversion of ESRI Arcinfo (binary) Vector Coverage in E00 format.
- avida-base (2.0b7-4.2)
- Auto-adaptive genetic system for Artificial Life research
- avida-qt-viewer (2.0b7-4.2)
- qt viewer for avida
- avida-viewer (2.0b7-4.2)
- ncurses viewer for avida
- avogadro (0.8.1-4)
- advanced molecular editor
- biococoa.app (1.6.0-7+b1)
- Sequence file format conversion for GNUstep
- biomode (1.002-7)
- [Biology] An Emacs mode to edit genetic data
- bioperl (1.5.2.102-3)
- Perl tools for computational molecular biology
- biosquid (1.9g+cvs20050121-2)
- utilities for biological sequence analysis
- bkchem (0.12.2-1)
- Python based chemical structures editor
- blast2 (1:2.2.18.20080302-3)
- Basic Local Alignment Search Tool
- bodr (8-1)
- Blue Obelisk Data Repository
- boinc-app-seti (5.13+cvs20060510-4)
- SETI@home application for the BOINC client
- boxshade (3.3.1-3)
- Pretty-printing of multiple sequence alignments
- cassbeam (1.0-7+b1 [alpha, amd64, arm, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.0-7 [armel])
- A program for Cassegrain antenna modelling
- cbflib-bin (0.7.9.1-1)
- utilities to manipulate CBF files
- celestia (1.5.1+dfsg1-1)
- A real-time visual space simulation
- celestia-common (1.5.1+dfsg1-1)
- Datafiles for Celestia, a real-time visual space simulation
- celestia-common-nonfree (1.5.1-1) [non-free]
- Non-free datafiles for Celestia, a real-time visual space simulation
- celestia-glut (1.5.1+dfsg1-1)
- A real-time visual space simulation (GLUT frontend)
- cernlib (2006.dfsg.2-13)
- CERNLIB data analysis suite - general use metapackage
- cernlib-core (2006.dfsg.2-13)
- CERNLIB data analysis suite - main libraries and programs
- (2006.dfsg.2-13)
- CERNLIB data analysis suite - extra programs
- cernlib-montecarlo (2006.dfsg.2-5)
- CERNLIB Monte Carlo libraries
- chemtool (1.6.11-2)
- Chemical structures drawing program
- clustalw (2.0.9-1) [non-free]
- global multiple nucleotide or peptide sequence alignment
- clustalw-mpi (0.15-1) [non-free]
- MPI-distributed global sequence alignment with ClustalW
- clustalx (1.83-4) [non-free]
- GUI for Clustal W
- complearn-gui (1.0.6-4)
- interactive 3d data mining tool and demo for universal machine learning
- complearn-tools (1.1.5-1)
- complearn machine-learning command-line utilities
- dcmtk (3.5.4-3)
- The OFFIS DICOM toolkit command line utilities
- dialign (2.2.1-3)
- Segment-based multiple sequence alignment
- dialign-tx (1.0.1-2)
- Segment-based multiple sequence alignment
- dialign-tx-data (1.0.1-2)
- Common data files for dialign-tx
- dicomnifti (2.28.11-1)
- converts DICOM files into the NIfTI format
- drawmap (2.5-3)
- draws customized maps, using raw USGS data files
- dsdp (5.8-5)
- Software for Semidefinite Programming
- dx (1:4.4.4-1)
- OpenDX (IBM Visualization Data Explorer) - main package
- dxsamples (4.2.0-1)
- Sample programs for the OpenDX Data Explorer
- e00compr (1.0.0-7)
- a program to read/write Arc/Info compressed E00 files
- easychem (0.6-5)
- Draw high-quality molecules and 2D chemical formulas
- embassy-domainatrix (0.1.0-1)
- Extra EMBOSS commands to handle domain classification file
- embassy-domalign (0.1.0-1)
- Extra EMBOSS commands for protein domain alignment
- emboss (5.0.0-7)
- The European Molecular Biology Open Software Suite
- emboss-data (5.0.0-7)
- Data files for the EMBOSS package
- emboss-explorer (2.2.0-6)
- web-based GUI to EMBOSS
- engauge-digitizer (4.1-2)
- interactively extracts numbers from bitmap graphs or maps
- ent (1.1debian-1)
- pseudorandom number sequence test program
- epigrass (1.5.1-3)
- scientific tool for simulations and scenario analysis in network epidemiology
- exonerate (2.0.0-1+b1 [sparc], 2.0.0-1 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc, s390])
- generic tool for pairwise sequence comparison
- extrema (4.3.6-1+b1 [s390, sparc], 4.3.6-1 [alpha, amd64, arm, armel, hppa, i386, ia64, mips, mipsel, powerpc])
- powerful visualization and data analysis tool
- fastdnaml (1.2.2-8)
- Tool for construction of phylogenetic trees of DNA sequences
- fastlink (4.1P-fix94b-2)
- A faster version of pedigree programs of Linkage
- fityk (0.8.6-2)
- general-purpose nonlinear curve fitting and data analysis
- fsl (4.0.4-1) [non-free]
- analysis tools for FMRI, MRI and DTI brain imaging
- fslview (3.0+4.0.2-3)
- viewer for (f)MRI and DTI data
- fv (3.0-17)
- a tool for viewing and editing FITS format files
- g3data (1:1.5.1-1)
- extract data from scanned graphs
- gabedit (2.1.8-2)
- graphical user interface to Ab Initio packages
- garlic (1.6-1)
- A visualization program for biomolecules
- gausssum (2.1.4-1)
- parse and display Gaussian, GAMESS, and etc's output
- gchempaint (0.8.7-2+b1)
- 2D chemical structures editor for the GNOME2 desktop
- gcrystal (0.8.7-2+b2 [armel], 0.8.7-2+b1 [alpha, amd64, arm, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc])
- lightweight crystal structures visualizer
- gcu-bin (0.8.7-2+b2 [armel], 0.8.7-2+b1 [alpha, amd64, arm, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc])
- GNOME chemistry utils (helper applications)
- gcu-plugin (0.8.7-2+b2 [armel], 0.8.7-2+b1 [alpha, amd64, arm, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc])
- GNOME chemistry utils (browser plugin)
- gcx (0.9.11-3)
- astronomical image processing and photometry gtk+ application
- gdal-bin (1.5.2-3)
- Geospatial Data Abstraction Library - Utility programs
- gdis (0.89-2.1 [i386], 0.89-2 [alpha, amd64, arm, armel, hppa, ia64, mips, mipsel, powerpc, s390, sparc])
- molecular display
- gdpc (2.2.4-3)
- visualiser of molecular dynamic simulations
- gdpc-examples (2.2.4-3)
- example files for the gdpc program
- geant321 (1:3.21.14.dfsg-8)
- [Physics] Particle detector description and simulation tool
- geant321-data (1:3.21.14.dfsg-8)
- [Physics] Data for GEANT 3.21 detector simulator
- gelemental (1.2.0-3)
- Periodic Table viewer
- genesis (2.2.1-12+b1 [alpha, amd64, arm, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 2.2.1-12 [armel])
- general-purpose neural simulator
- geotiff-bin (1.2.4-3)
- the GeoTIFF library -- tools
- gff2aplot (2.0-5)
- pair-wise alignment-plots for genomic sequences in PostScript
- gff2ps (0.98d-3)
- produces PostScript graphical output from GFF-files
- glam2 (1064-1)
- gapped protein motifs from unaligned sequences
- gliese (1.1-15) [non-free]
- stellar data set from the Third Catalogue of Nearby Stars
- gmt (4.3.1-3)
- Generic Mapping Tools
- gperiodic (2.0.10-5)
- periodic table application
- gpib-modules-source (3.2.10-2)
- kernel modules for various GPIB boards
- gpiv (0.5.2-3)
- graphic user interface program for Particle Image Velocimetry
- gpivtools (0.5.2-3)
- Command line programs for Particle Image Velocimetry
- gpx2shp (0.69-3)
- convert GPS or GPX file to ESRI Shape file
- grass (6.2.3-2.1)
- Geographic Resources Analysis Support System
- grass-doc (6.2.3-2.1)
- Geographic Resources Analysis Support System documentation
- gri (2.12.17-1)
- a language for scientific illustration
- gri-el (2.12.17-1)
- Emacs major-mode for gri, a language for scientific graphics
- gromacs (3.3.3-2)
- Molecular dynamics simulator, with building and analysis tools
- gromacs-data (3.3.3-2)
- GROMACS molecular dynamics sim, data and documentation
- gromacs-lam (3.3.3-2)
- Molecular dynamics sim, binaries for LAM-MPI parallelization
- gromacs-mpich (3.3.3-2)
- Molecular dynamics sim, binaries for MPICH parallelization
- gromacs-openmpi (3.3.3-2)
- Molecular dynamics sim, binaries for OpenMPI parallelization
- gvb (1.1.2-1)
- visual simulator of 1 and 2-dimensional vibrations
- gwyddion (2.10-1+b1 [hppa, mips, s390, sparc], 2.10-1 [alpha, amd64, arm, armel, i386, ia64, mipsel, powerpc])
- Scanning Probe Microscopy visualization and analysis
- gwyddion-common (2.10-1)
- Gwyddion SPM analysis - common files
- gwyddion-plugins (2.10-1+b1 [hppa, mips, s390, sparc], 2.10-1 [alpha, amd64, arm, armel, i386, ia64, mipsel, powerpc])
- Gwyddion SPM analysis - plugins
- h5utils (1.10-7+b1 [alpha, amd64, arm, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.10-7 [armel])
- HDF5 files visualization tools
- harminv (1.3.1-1.1)
- extraction of complex frequencies and amplitudes from time series
- hdf5-tools (1.6.6-4)
- Hierarchical Data Format 5 (HDF5) - Runtime tools
- hmmer (2.3.2-5)
- profile hidden Markov models for protein sequence analysis
- hmmer-pvm (2.3.2-5)
- HMMER programs with PVM (Parallel Virtual Machine) support
- hodie (1.4-8)
- prints the date in latin
- horae (066-3) [contrib]
- interactive graphical processing and analysis of EXAFS data
- ifeffit (2:1.2.10a-5) [contrib]
- An interactive program for XAFS analysis
- ifrit (3.2.5-1)
- a powerful tool for visualizing 3-dimensional data sets
- imagej (1.40a-1) [contrib]
- Image processing program inspired by NIH Image for the Macintosh
- imview (1.1.9c-1)
- Image viewing and analysis application
- indi (4:3.5.9-2)
- Instrument Neutral Distributed Interface for astronomical devices
- israndom (1.0.7-2)
- nonclassical randomness test using data compressors
- kalign (2.03-2)
- Global and progressive multiple sequence alignment
- kalzium (4:3.5.9-2)
- chemistry teaching tool for KDE
- kalzium-data (4:3.5.9-2)
- data files for Kalzium
- kstars (4:3.5.9-2)
- desktop planetarium for KDE
- kstars-data (4:3.5.9-2)
- data files for KStars desktop planetarium
- kxterm (2006.dfsg.2-13)
- CERNLIB data analysis suite - KUIP terminal emulator
- libbio-ruby (1.1.0-1)
- bioruby tools for computational molecular biology
- libbio-ruby1.8 (1.1.0-1)
- bioruby tools for computational molecular biology
- libclp0 (1.8.0-1)
- Coin-or linear programming solver
- libclp0-dbg (1.8.0-1)
- Coin-or linear programming solver
- libcoinutils0 (2.3.1-1)
- Coin-or collection of utility classes
- libcoinutils0-dbg (2.3.1-1)
- Coin-or collection of utility classes
- libgeotiff-epsg (1.2.4-3) [non-free]
- the GeoTIFF library -- EPSG Geodetic Parameter Dataset
- libghemical-data (2.96-2)
- Molecular Modelling Library (Data Files)
- libgpib-bin (3.2.10-2+b1)
- libgpib support applications and configuration
- libpostgis-java (1.3.3-3)
- geographic objects support for PostgreSQL -- JDBC support
- libworldwind-java (0.5.0-1) [non-free]
- 3D Virtual Globe
- loki (2.4.7.4-4)
- MCMC linkage analysis on general pedigrees
- mafft (6.240-2)
- Multiple alignment program for amino acid or nucleotide sequences
- mayavi (1.5-5)
- A scientific data visualization system
- mayavi2 (2.2.0-1)
- A scientific visualization package for 2-D and 3-D data
- meep (0.10-2.1+b1 [alpha, amd64, arm, i386, ia64, mips, mipsel, powerpc, s390, sparc], 0.10-2.1 [armel, hppa])
- MIT Electromagnetic Equation Propagation
- meep-mpi (0.10-2.1+b1 [alpha, amd64, arm, i386, ia64, mips, mipsel, powerpc, s390, sparc], 0.10-2.1 [armel, hppa])
- MIT Electromagnetic Equation Propagation, parallel (mpich) version
- melting (4.2h-3)
- computing the melting temperature of nucleic acid duplex
- melting-gui (4.2h-3)
- Graphical user interface for melting
- merkaartor (0.0.11~svn7913-2)
- map editor for OpenStreetMap.org
- minc-tools (2.0.15-3)
- MNI medical image format tools
- minisat2 (070721-5 [i386], 070721-3 [amd64, arm, armel, hppa, ia64, mips, mipsel, powerpc, s390, sparc])
- Fast and lightweight SAT solver
- mipe (1.1-3)
- Tools to store PCR-derived data
- mn-fit (5.13-6+b1 [mips, mipsel], 5.13-6 [alpha, amd64, arm, armel, hppa, i386, ia64, powerpc, s390, sparc])
- interactive analysis package for fitting data and histograms
- mn-fit-common (5.13-6)
- common files for Mn_Fit
- molphy (2.3b3-5) [non-free]
- Program Package for MOLecular PHYlogenetics
- montecarlo-base (2006.dfsg.2-5)
- [Physics] Common files for CERNLIB Monte Carlo libraries
- montecarlo-data (2006.dfsg.2-5)
- [Physics] data for CERNLIB Monte Carlo libraries
- mopac7-bin (1.13-2)
- Semi-empirical Quantum Chemistry Library
- mozilla-biofox (1.1.4-3)
- extension of bioinformatics tools to Iceape and Iceweasel browsers
- mpb (1.4.2-11.1+b1 [alpha, amd64, arm, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.4.2-11.1 [armel, hppa])
- MIT Photonic-Bands
- mpb-mpi (1.4.2-11.1+b1 [alpha, amd64, arm, i386, ia64, mips, mipsel, powerpc, s390, sparc], 1.4.2-11.1 [armel, hppa])
- MIT Photonic-Bands, parallel (mpich) version
- mpqc (2.3.1-3)
- The Massively Parallel Quantum Chemistry Program
- mpqc-support (2.3.1-3)
- Support programs and tools for MPQC
- mssstest (3.0-1) [non-free]
- Normalisation of disease scores for patients with Multiple Sclerosis
- mummer (3.20-3)
- Efficient sequence alignment of full genomes
- muscle (3.70+fix1-2)
- Multiple alignment program of protein sequences
- ncbi-epcr (2.3.10-1)
- Tool to test a DNA sequence for the presence of sequence tagged sites
- ncbi-tools-bin (6.1.20080302-3)
- NCBI libraries for biology applications (text-based utilities)
- ncbi-tools-x11 (6.1.20080302-3)
- NCBI libraries for biology applications (X-based utilities)
- nco (3.9.0-1.2)
- command-line operators to analyze netCDF files
- necpp (1.2.6+cvs20070816-1.3)
- NEC2 Evolution Antenna Modelling System
- netcdf-bin (1:3.6.2-3.1)
- Programs for reading and writing NetCDF files
- njplot (2.2-1)
- A tree drawing program
- ogdi-bin (3.2.0~beta1-3.1)
- Open Geographic Datastore Interface Library -- utilities
- openbabel (2.2.0-2)
- Chemical toolbox utilities
- opencascade-tools (6.2-7) [non-free]
- OpenCASCADE CAE platform tools
- openjump (1.0-3) [contrib]
- Open Java Unified Mapping Platform JUMP
- openmx (3.2.4.dfsg-3)
- Package for nano-scale material simulations
- openuniverse (1.0beta3.1+dfsg-0.1)
- 3D Universe Simulator
- openuniverse-common (1.0beta3.1+dfsg-0.1)
- 3D Universe Simulator data files
- opj2dat (20080225-2)
- OriginLab Origin project files to data files converter
- paje.app (1.97+cvs20080110-2+b1)
- generic visualization tool (Gantt chart and more)
- paraview (3.2.2-1)
- Parallel Visualization Application
- paw (1:2.14.04.dfsg.2-6)
- Physics Analysis Workstation - a graphical analysis program
- paw++ (1:2.14.04.dfsg.2-6)
- Physics Analysis Workstation (Lesstif-enhanced version)
- paw-common (1:2.14.04.dfsg.2-6)
- Physics Analysis Workstation (common files)
- paw-demos (1:2.14.04.dfsg.2-6)
- Physics Analysis Workstation examples and tests
- perlprimer (1.1.14-3)
- Graphical design of primers for PCR
- php5-gpib (3.2.10-2+b1)
- libgpib PHP5 bindings
- phylip (1:3.67-3) [non-free]
- [Biology] A package of programs for inferring phylogenies
- picosat (632-1)
- SAT solver with proof and core support
- planets (0.1.13-6)
- Gravitation simulation of planetary bodies
- poa (2.0+20060928-2)
- Partial Order Alignment for multiple sequence alignment
- polyxmass (0.9.2)
- Mass spectrometry software framework
- polyxmass-bin (0.9.8-1)
- Mass spectrometry framework - GUI program
- polyxmass-bin-common (0.9.8-1)
- Mass spectrometry framework - GUI program arch-indep data
- polyxmass-common (0.8.7-2)
- Mass spectrometry framework - essential polymer chemistry data
- polyxmass-data (0.8.7-1)
- Mass spectrometry framework - supplementary chemical data
- praat (5.0.29-1)
- program for speech analysis and synthesis
- primer3 (1.1.4-1)
- Tool to design flanking oligo nucleotides for DNA amplification
- probcons (1.12-4)
- PROBabilistic CONSistency-based multiple sequence alignment
- (1.12-4)
- Extra programs from the probcons package
- proda (1.0-7)
- multiple alignment of protein sequences
- proj (4.6.0-2)
- Cartographic projection filter and library
- psi3 (3.3.0-3)
- Quantum Chemical Program Suite
- pymol (1.1-1)
- Molecular Graphics System
- qfits-tools (6.2.0-1)
- FITS manipulation tools
- qmc (0.94-3+b1 [alpha, arm, hppa, i386, ia64, mips, mipsel, powerpc, s390, sparc], 0.94-3 [amd64, armel])
- Quine McClusky Simplification Tool
- qsearch-tools (1.0.8-1)
- qsearch machine-learning command-line utilities
- qtdmm (0.8.12-2.1)
- GUI for digital multimeter
- rasmol (2.7.4.2-3+b1 [hppa, mips, s390, sparc], 2.7.4.2-3 [alpha, amd64, arm, armel, i386, ia64, mipsel, powerpc])
- Visualize biological macromolecules
- raster3d (2.7s-1+b1 [mips, mipsel], 2.7s-1 [alpha, amd64, arm, hppa, i386, ia64, powerpc, s390, sparc]) [non-free]
- tools for generating images of proteins or other molecules
- readseq (1-7)
- [Biology] Conversion between sequence formats
- rnahybrid (2.1-1)
- Fast and effective prediction of microRNA/target duplexes
- robot-player (2.0.4-3.3)
- Networked server for robots and sensors
- robot-player-dev (2.0.4-3.3)
- Networked server for robots and sensors - development package
- robot-player-doc (2.0.4-3.3)
- Networked server for robots and sensors (documentation)
- root-plugin-asimage (5.18.00-2.1+b1)
- AfterImage plugin for ROOT
- root-plugin-fftw3 (5.18.00-2.1+b1)
- FFTw plugin for ROOT
- root-plugin-fumili (5.18.00-2.1+b1)
- Fumili plugin for ROOT
- root-plugin-gl (5.18.00-2.1+b1)
- GL plugin for ROOT
- root-plugin-hbook (5.18.00-2.1+b1)
- Hbook plugin for ROOT
- root-plugin-krb5 (5.18.00-2.1+b1)
- Kerberos (version 5) plugin for ROOT
- root-plugin-minuit2 (5.18.00-2.1+b1)
- Minuit version 2 plugin for ROOT
- root-plugin-mysql (5.18.00-2.1+b1)
- MySQL client plugin for ROOT
- root-plugin-netx (5.18.00-2.1+b1)
- NetX plugin for ROOT
- root-plugin-odbc (5.18.00-2.1+b1)
- ODBC plugin for ROOT
- root-plugin-peac (5.18.00-2.1+b1)
- PEAC plugin for ROOT - run-time libraries
- root-plugin-pgsql (5.18.00-2.1+b1)
- PostgreSQL client plugin for ROOT
- root-plugin-proof (5.18.00-2.1+b1)
- PROOF plugin for ROOT
- root-plugin-qt (5.18.00-2.1+b1)
- Qt plugin for ROOT
- root-plugin-sql (5.18.00-2.1+b1)
- SQL plugin for ROOT
- root-plugin-xml (5.18.00-2.1+b1)
- XML reader plugin for ROOT
- root-plugin-xproof (5.18.00-2.1+b1)
- XPROOF plugin for ROOT
- root-system (5.18.00-2.1)
- Meta package to install all ROOT packages
- root-system-bin (5.18.00-2.1+b1)
- Numerical data analysis framework - general applications
- root-system-common (5.18.00-2.1)
- Common files for ROOT
- root-system-proofd (5.18.00-2.1+b1)
- Parallel ROOt Facility - distributed, parallel computing
- root-system-rootd (5.18.00-2.1+b1)
- ROOT remote file server
- root-system-xrootd (5.18.00-2.1+b1)
- Extented ROOT file server
- saods9 (4.0b7-2+b1 [mips, mipsel], 4.0b7-2 [alpha, amd64, arm, armel, hppa, i386, ia64, powerpc, s390, sparc])
- image display tool for astronomy
- seaview (1:2.4-1)
- Multiple sequence alignment editor
- seesat5 (0.90.10-1.1)
- a satellite location program
- (2.4.4-1)
- source extractor for astronomical images
- shogun-dbg (0.6.3-1)
- Large Scale Machine Learning Toolbox
- shogun-octave (0.6.3-1)
- Large Scale Machine Learning Toolbox
- shogun-octave-modular (0.6.3-1)
- Large Scale Machine Learning Toolbox
- shogun-python (0.6.3-1)
- Large Scale Machine Learning Toolbox
- shogun-python-modular (0.6.3-1)
- Large Scale Machine Learning Toolbox
- shogun-r (0.6.3-1)
- Large Scale Machine Learning Toolbox
- shogun-readline (0.6.3-1)
- Large Scale Machine Learning Toolbox
- sibsim4 (0.17-1)
- align expressed RNA sequences on a DNA template
- sigma-align (1.1.1-3)
- Simple greedy multiple alignment of non-coding DNA sequences
- sim4 (0.0.20030921-3)
- tool for aligning cDNA and genomic DNA
- sixpack (1:0.64-2) [contrib]
- full-featured package for XAS analysis
- slang-xfig (0~svn.192-4)
- produce plots and drawings through Xfig's fig2dev in S-Lang
- spass (2.1-4)
- An automated theorem prover for first-order logic with equality
- ssystem (1.6-17)
- 3D solar system simulator
- stage (2.0.3-2)
- Robot simulation for Player
- stardata-common (0.5)
- Common framework to manage astronomy packages
- starplot (0.95.5-1)
- 3-dimensional perspective star map viewer
- stellarium (0.9.1-4)
- real-time photo-realistic sky generator
- stellarium-data (0.9.1-4)
- datafiles for Stellarium, a real-time photo-realistic sky generator
- survex (1.0.39.1-2.1)
- cave surveying and mapping software
- survex-aven (1.0.39.1-2.1)
- sophisticated cave survey viewer for Survex
- survex-svxedit (1.0.39.1-2.1)
- survey data editor for Survex
- t-coffee (5.72-1)
- Multiple Sequence Alignment
- t-coffee-examples (5.72-1)
- annotated examples for the use of T-Coffee
- tcd-utils (20061127-2)
- convert Tide Constituent Database (TCD) files
- tessa (0.3.1-4+b2 [alpha, amd64, arm, hppa, i386, ia64, mipsel, powerpc, s390, sparc], 0.3.1-4+b1 [armel, mips])
- simulation of 3D optical systems with the FDTD method
- tessa-mpi (0.3.1-4+b2 [alpha, amd64, arm, hppa, i386, ia64, mipsel, powerpc, s390, sparc], 0.3.1-4+b1 [armel, mips])
- simulation of 3D optical systems using FDTD on LAM-MPI clusters
- therion (0.5.1+nmu1)
- Cave surveying - 2D and 3D drawing software
- therion-doc (0.5.1+nmu1)
- Documentation for Therion Cave surveying software
- therion-viewer (0.5.1+nmu1)
- Cave surveying - 3D viewer for therion models
- tigr-glimmer (3.02-1)
- Gene detection in archea and bacteria
- tochnog (20010124-3.2)
- A free implicit/explicit finite element analysis program
- transcalc (0.14-2)
- microwave and RF transmission line calculator
- tree-ppuzzle (5.2-4)
- Parallelized reconstruction of phylogenetic trees by maximum likelihood
- tree-puzzle (5.2-4)
- Reconstruction of phylogenetic trees by maximum likelihood
- treetool (2.0.2a-5) [non-free]
- interactive tool for displaying phylogenetic trees
- treeviewx (0.5.1-5)
- Displays and prints phylogenetic trees
- units-filter (2.8)
- Parser for expressions concerning physical values
- v-sim (3.4.0.3-1+b1 [i386], 3.4.0.3-1 [alpha, amd64, arm, armel, hppa, ia64, mips, mipsel, powerpc, s390, sparc])
- Visualize atomic structures
- v-sim-common (3.4.0.3-1)
- Visualize atomic structures
- v-sim-plugins (3.4.0.3-1+b1 [i386], 3.4.0.3-1 [alpha, amd64, arm, armel, hppa, ia64, mips, mipsel, powerpc, s390, sparc])
- Plugins for V_Sim (a 3D visualization package)
- viewmol (2.4.1-13)
- A graphical front end for computational chemistry programs.
- weka (3.5.7+tut1-1) [contrib]
- Machine learning algorithms for data mining tasks
- wise (2.4.1-5)
- comparison of biopolymers, commonly DNA and protein sequences
- worldwind (0.5.0-1) [non-free]
- 3D Virtual Globe
- xbs (0-7.3)
- 3-d models and movies of molecules
- xdrawchem (1.9.9-4+b2)
- Chemical structures and reactions editor
- xmakemol (5.16-1)
- A program for visualizing atomic and molecular systems
- xmakemol-gl (5.16-1)
- A program for visualizing atomic and molecular systems
- xmds (1.6.6-1)
- eXtensible Multi-Dimensional Simulator
- xorsa (0.7.0-12)
- tool for Celestial Mechanics investigations
- xplot (1.19-7.2)
- A simple x-y column data plotter for X.
- xtide (2.9.5-3)
- provides tide and current predictions
- xtide-coastline (20020202-1)
- coastline data for xtide
- xtide-data (20070318-3)
- Harmonics data for xtide
- xtide-data-nonfree (20070318-2) [non-free]
- Harmonics data for xtide (Canada, Netherlands, Germany and UK)
- yale (1.0-14) [non-free]
- stellar data set from the Yale Bright Star Catalog
- ygraph (0.15-3.1)
- Visualize one-dimensional scientific data
- zimpl (2.07.ds1-2)
- mathematical modeling language for optimization problems
