2010
seaview (1:4.2.5-1) unstable; urgency=low
* New upstrem version
* debian/watch: Force passive mode for ftp, because this works more
reliably
* Using dpkg source format version ‘3.0 (quilt)’ (debian/source/format)
* debian/seaview.doc-base.reference: There is no docbase section
Bibliography (even if this would be interesting) and thus it was
moved to Science/Biology
-- Andreas Tille <tille@debian.org> Fri, 25 Jun 2010 11:56:05 +0200
seaview (1:4.2.4-1) unstable; urgency=low
* New upstream release.
* debian/control:
- Incremented Standards-Version to reflect conformance with Policy 3.8.4
(no changes needed).
- Support only i386 and amd64 until non-free autobuilders get more robust.
* Updated bibliographic reference in ‘debian/upstream-metadata.yaml’.
-- Charles Plessy <plessy@debian.org> Thu, 08 Apr 2010 13:07:41 +0900
seaview (1:4.2.1-1) unstable; urgency=low
[ Charles Plessy ]
* New upstream release that can be compiled with GCC 4.4.2
Closes: #560438, Thanks to Luk Claes for the help.
* Updated bibliographic reference and Debian copyright file.
[ Andreas Tille ]
* s/Debian-Med/Debian Med/ in debian/control.
-- Charles Plessy <plessy@debian.org> Wed, 06 Jan 2010 21:59:51 +0900
2009
seaview (1:4.2-1) unstable; urgency=low
* New upstream release.
* debian/control:
- Build depend on unversionned libjpeg-dev package.
- Added XS-Autobuild: yes to benefit from the non-free autobuilders.
- checked package conformance with Policy 3.8.3 (no changes needed).
* Documented zlib.conf in debian/copyright.
* Added various informations in debian/upstream-metadata.yaml.
-- Charles Plessy <plessy@debian.org> Sun, 18 Oct 2009 17:10:08 +0900
seaview (1:4.1-1) unstable; urgency=low
* New upstream version adding nucleotide ambiguity symbols in consensus
DNA sequences.
* debian/control: checked package conformance with Policy 3.8.2
and incremented Standards-Version accordingly (no changes needed).
* debian/seaview.1*: accepted upstream and therefore deleted.
-- Charles Plessy <plessy@debian.org> Mon, 13 Jul 2009 18:54:00 +0900
seaview (1:4.0-1) unstable; urgency=low
* New upstream version
- Computes and draws parsimony, distance and PhyML phylogenetic trees.
- This new version unfortunately uses non-free files, and has therefore been
removed from Debian, but is distributed in the ‘non-free’ section of its
archive as a service its users.
* debian/control:
- Changed section to non-free/science.
- Build-Depends on libxft-dev and libxext-dev.
- Recommends phyml, muscle and clustalw.
- Dropped dependency on xterm.
- checked package conformance with Policy 3.8.1.
- Updated description and removed reference from it.
- Dropped build dependency on quilt.
* debian/patches and debian/README.source removed:
- 20-no-PDF-in-help.patch: upstream wording became true for Debian as well.
- 21-location-of-seaview.help.patch: passing -DHELPFILENAME through
debian/rules instead.
- 40-seaview_align.sh-newline.patch, seaview_align-full_path.patch:
seaview_align.sh was removed upstream.
* debian/README.Debian deleted as well (obsolete).
* debian/rules:
- Makes `seaview' instead of `seaviewps' as (non-free) PDF support is not
default anymore.
- Indicate the location of the help file with:
-DHELPFILENAME=\\\"/usr/share/doc/seaview/seaview.html\\\"
- Uses `dh clean' and $(RM) macro in the clean target.
- Uses `dh binary-arch` in the binary-arch target (created debian/docs,
debian/seaview.examples, and debian/manpages).
- Removed protein.mase from examples (removed upstream).
- Removed patching facilities (no patches to apply anymore).
* Removed `seaview_align.sh' from debian/install, as it was removed upstream.
* debian/copyright:
- Incremented year and version.
- Link to the precise versions of the GNU GPL and LGPL.
- Added the necessary disclaimers because SeaView became non-free.
* Updated the manpage (debian/seaview.1*).
* Registered the new help file with doc-base (debian/seaview.doc-base.help).
-- Charles Plessy <plessy@debian.org> Wed, 27 May 2009 08:07:40 +0900
2008
seaview (1:3.2-1) unstable; urgency=low
* New upstream version:
- Version 3.2: Database import can be done using a keyword.
- Version 3.1: now use Fl_Native_File_Chooser.
- Version 3.0: sequences can be imported from embl, genbank, swissprot if
internet access.
* debian/copyright:
- Added the FL directory from Upstream sources.
- Updated to the latest version of the machine-readable format.
* debian/seaview.svg: vector icon made for SeaView and forwarded upstream.
* debian/seaview.1*: added year 2008 to copyright statements.
* Updated my email address.
* debian/control, debian/compat: using Debhelper 7.
* debian/control: added build-dependency on libpng12-dev and zlib1g-dev.
* Experimental handling of bibliographic references:
- debian/references contains a BibTeX-formatted reference.
- debian/seaview.doc-base.references registers it for Doc-base
in a "Bibliography" section to be proposed later.
-- Charles Plessy <plessy@debian.org> Sun, 14 Dec 2008 22:58:57 +0900
seaview (1:2.4-1) unstable; urgency=low
* New upstream version:
- Version 2.3: corrected bug if adding/deleting/moving sequences when in
'view as proteins' mode.
- Version 2.4: PHYLIP format: user can customize the max length of names.
* debian/control:
- Suggests: muscle, clustalw (non-free). Seaview detects if they
are not present and grays the corresponding option.
- Allows the upload by Debian Maintainers.
- Checked that the package conforms to Policy 3.7.3.
* debian/copyright: made machine-readable
* MIME support:
- debian/seaview.sharedmimeinfo associates .aln suffix and
text/x-clustalw-alignment, debian/seaview.mime and
debian/seaview.desktop associate seaview with this MIME type.
- debian/rules executes dh_installmime.
* debian/seaview.1.xml: increased version number to 2.4 (no other changes
needed)
* debian/seaview.1: rebuilt with DocBook XSL Stylesheets v1.73.2.
-- Charles Plessy <charles-debian-nospam@plessy.org> Sat, 12 Jan 2008 15:30:07 +0900
2007
seaview (1:2.2-1) unstable; urgency=low
[ Nelson A. de Oliveira ]
* Updated watch file.
[ Charles Plessy ]
* New upstream release:
- introduced interface to external alignment programs.
- Work with several alignment windows; copy and paste sequence data
between them.
* Moved the Homepage: field out from the package's description.
* Removed the XS- prefix of the Vcs fields in debian/control
* Building the manpage offline: added seaview.1 to the package, and
removed xsltproc, docbook-xml and docbook-xsl from the build-dependencies.
* Patches to Seaview:
- Refreshed.
- Suppressed xterm_to_x-terminal-emulator.patch : strange communication
problems happen between seaview and some terminal emulators, such as
gnome-terminal or konsole.
- Hardcoded the path to seaview_align.sh.
-- Charles Plessy <charles-debian-nospam@plessy.org> Sun, 18 Nov 2007 23:35:29 +0900
seaview (1:2.0-1) unstable; urgency=low
* New upstream release. Use "Props:View as proteins" to align
protein-coding DNA sequences.
-- Charles Plessy <charles-debian-nospam@plessy.org> Fri, 24 Aug 2007 00:02:33 +0900
seaview (20070615-1) unstable; urgency=low
* New upstream release correcting problems with lowercase characters.
* Converted the SVN repository which hosts the Debian source package
to use the MergeWithUpstream option.
* Moved examples to debian/examples.
* Using 'quilt' as a patch management system instead of 'dpatch'.
* Managing all the changes to the sources with quilt.
* Adding $(misc-Depends) in debian/control.
* Debian Menu transition: moving entry to Applications/Science/Biology.
* Manpage: automatic date update; upgrading revision number.
* Adding bibliographic reference to debian/copyright and debian/control.
* Dropping 'config.h' patch from .diff.gz.
-- Charles Plessy <charles-debian-nospam@plessy.org> Sat, 21 Jul 2007 12:43:23 +0900
seaview (20070417-1) unstable; urgency=low
* New upstream release adding processing of comments in FASTA format.
-- Charles Plessy <charles-debian-nospam@plessy.org> Sun, 29 Apr 2007 22:51:23 +0900
seaview (20070215-1) unstable; urgency=low
* New upstream release, adding a new "Edit sequence" option in the Edit menu. * Updated manpage and converted it to Unicode. * Add Subversion repository URL to debian/control. * Including /usr/share/dpatch/dpatch.make in debian/rules.
-- Charles Plessy <charles-debian-nospam@plessy.org> Thu, 5 Apr 2007 09:38:08 +0900
2006
seaview (20061005-1) unstable; urgency=low
* New upstream release. The xpm icon and its sources are now included in.
* New maintainer email: the previous one was not the intended mailing list.
* Removing options passed to x-terminal-emulator if they are not a MUST in
the policy chapter 11.8.3.
* Improved manpage.
-- Charles Plessy <charles-debian-nospam@plessy.org> Sat, 28 Oct 2006 17:27:02 +0900
seaview (20060918-1) unstable; urgency=low
* New upstream release (Closes: #357585) * Uses muscle instead of clustalw, therefore moving to main (Closes: #357587) * Update debian/copyright: the current licence of seaview is GPL (Closes: #357581) * Conforms to Standards version 3.7.2 and debhelper compatibility level 5. * Collective maintenance: Debian-Med Packaging Team is the new Maintainer. * Outputs PS instead of PDF as Debian can not support the PDFlib. * Uses x-terminal-emulator instead of xterm. * Support for freedesktop menus, and nice new icon. * Updated manpage.
-- Charles Plessy <charles-debian-nospam@plessy.org> Thu, 28 Sep 2006 12:13:53 +0900
2005
seaview (20021127-4.1) unstable; urgency=medium
* Non-maintainer upload. * Medium-urgency upload for RC bugfix. * Rebuild for the C++ ABI transition. Closes: #328175.
-- Steve Langasek <vorlon@debian.org> Thu, 22 Sep 2005 02:07:07 -0700
2003
seaview (20021127-4) unstable; urgency=low
* Cleaned up debian/rules file. * Conforms to Standards version 3.6.1.
-- Brian R Furry <bfurry@nac.net> Sun, 30 Nov 2003 00:04:02 +0000
seaview (20021127-3) unstable; urgency=low
* Adopted by new maintainer; closes: 100261 * Conforms to Standards version 3.6.0.
-- Brian R Furry <bfurry@nac.net> Thu, 11 Sep 2003 21:12:40 -0400
seaview (20021127-2.2) unstable; urgency=low
* NMU.
* Downgrade dependency on clustalw to a recommendation, since we don't
absolutely need it and it doesn't exist on mips(el).
-- Aaron M. Ucko <ucko@debian.org> Tue, 17 Jun 2003 13:22:55 -0400
seaview (20021127-2.1) unstable; urgency=low
* NMU. * Rebuild with Xft2-based FLTK (>= 1.1.3-2.1).
-- Aaron M. Ucko <ucko@debian.org> Wed, 7 May 2003 20:36:02 -0400
seaview (20021127-2) unstable; urgency=low
* QA upload. * Built with g++ 3.2 and libfltk1.1c102 (closes: #176147).
-- Colin Watson <cjwatson@debian.org> Sat, 11 Jan 2003 02:50:11 +0000
2002
seaview (20021127-1) unstable; urgency=low
* QA upload. * New upstream release. * Conforms to Standards version 3.5.8.
-- Matej Vela <vela@debian.org> Sun, 1 Dec 2002 22:14:33 +0100
seaview (20021010-1) unstable; urgency=low
* QA upload. * New upstream release. * Provide a config.h for old_file_chooser.cxx. * debian/menu: Use `section=Apps/Science hints=Biology' (see #162812).
-- Matej Vela <vela@debian.org> Sat, 19 Oct 2002 21:26:13 +0200
seaview (20020409-1) unstable; urgency=low
* QA upload.
* New upstream version (there's no version number in the sources).
Closes: #128357.
* align.cxx:
- Handle temporary files securely (seaview 0.0 is not vulnerable).
- Use x-terminal-emulator rather than xterm or rxvt.
* seaview.1:
- List NEXUS among the supported formats.
- `-reducefonts' is no longer accepted.
* Switched to debhelper 4.
* Moved /usr/lib/seaview/seaview.help to /usr/share/seaview as
architecture-independent.
* Changed section from contrib/misc to contrib/science.
* Added menu support.
* debian/changelog: Remove obsolete Emacs local variables.
* Conforms to Standards version 3.5.7.
-- Matej Vela <vela@debian.org> Fri, 20 Sep 2002 18:25:47 +0200
2001
seaview (0.0-6.1) unstable; urgency=low
* NMU * Update to build against XForms 0.89. (closes: Bug#118138)
-- Doug Porter <dsp@debian.org> Mon, 12 Nov 2001 11:43:51 -0500
seaview (0.0-6) unstable; urgency=low
* Maintainer set to Debian QA Group <packages@qa.debian.org>.
-- Adrian Bunk <bunk@fs.tum.de> Fri, 24 Aug 2001 23:58:22 +0200
seaview (0.0-5) unstable; urgency=low
* Adopted by new maintainer; closes: #92802 * Moved all doc files to /usr/share/doc; closes: #91647 * Moved manpage to /usr/share/man; closes: #91064 * Updated to latest policy, and added Build-Depends. * Removed some unnecessary files in debian dir.
-- Dr. Guenter Bechly <gbechly@debian.org> Sat, 7 Apr 2001 18:00:30 +0200
1999
seaview (0.0-4) unstable; urgency=low
* A few examples added * New bug in seaview_align.sh, this time fixed seriously.
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Thu, 3 Jun 1999 10:07:55 +0200
seaview (0.0-3) unstable; urgency=low
* Big bug in seaview_align.sh (not all parameters were passed).
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Wed, 26 May 1999 14:39:26 +0200
seaview (0.0-2) unstable; urgency=low
* No longer depends on c-shell or xterm. Closes #34700 * Manual page. Closes #34615
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Tue, 25 May 1999 14:42:15 +0200
seaview (0.0-1) unstable; urgency=low
* Initial Release.
-- Stephane Bortzmeyer <bortzmeyer@debian.org> Mon, 1 Mar 1999 16:41:51 +0100