2009
fsl (4.1.4-2) unstable; urgency=low
* Include a number of upstream patches that went into 4.1.4 after the
4.1.4-1 package got uploaded.
* Revert from -O3 to -O2 for compiler optimizations. -O3 seems to cause
trouble for some pieces (miscmaths, avwutils) on some architectures.
-- Michael Hanke <michael.hanke@gmail.com> Wed, 03 Jun 2009 20:52:45 +0200
fsl (4.1.4-1) unstable; urgency=low
* New upstream release. * Fixed bashisms (Closes: #530084).
-- Michael Hanke <michael.hanke@gmail.com> Sat, 23 May 2009 11:47:34 +0200
fsl (4.1.3-1) unstable; urgency=low
* New Upstream Version.
* Reverse the order of the octave*-headers build-dependency alternatives
to account for the removal of octave2.1-headers from unstable
(Closes: #523826).
* Do not build-depend on FSLView anymore. That setup was way to complex and
error-prone.
* Bumped Standard version to 3.8.1 -- no changes necessary.
-- Michael Hanke <michael.hanke@gmail.com> Mon, 27 Apr 2009 22:13:12 +0200
fsl (4.1.2-2) unstable; urgency=low
* Use internals libs compiled by the fslview package, instead of building
them again from fsl sources.
* Added 'XS-DM-Upload-Allowed: yes' in debian/control.
* Install fslio im* scripts.
-- Michael Hanke <michael.hanke@gmail.com> Sat, 07 Feb 2009 10:33:03 +0100
2008
fsl (4.1.2-1) unstable; urgency=low
* New Upstream Version.
* Added POSSUM installation directory to environment setup -- it refused to
work otherwise.
-- Michael Hanke <michael.hanke@gmail.com> Fri, 05 Dec 2008 10:23:08 +0100
fsl (4.1.1-2) unstable; urgency=low
* Compile and use fslio library version that comes with the FSL sources.
This fixes a bug when FSL 4.1 is used with ANALYZE images, which it
cannot reliably do anymore (only NIfTI is supported). Also updated the
configuration documentation (in /etc/fsl/fsl.sh) accordingly.
-- Michael Hanke <michael.hanke@gmail.com> Fri, 24 Oct 2008 12:27:38 +0200
fsl (4.1.1-1) unstable; urgency=low
* New Upstream Version fixing a number of bugs in FEAT, FDT and FNIRT.
* Updated repackaging. Repackaging procedure was changed to keep fslio in
the package. This version contains more up-to-date scripts than the ones
in the nifticlibs package.
* Install im* and tcl scripts from local fslio sources, instead of using the
(discontinued) ones in the nifticlibs package. Therefore also removing
dependency to 'nifti-bin'.
* Do not install installer script -- useless on Debian (Closes: #489596).
* Remove broken get-orig-source target from debian/rules. The repackaging
procedure is implemented in the 'repackage-fsl' script shipped with the
fslview package.
-- Michael Hanke <michael.hanke@gmail.com> Thu, 16 Oct 2008 14:28:34 +0200
fsl (4.1.0-1) unstable; urgency=low
* New Upstream Version. * Bumped Standard version to 3.8.0 -- no changes necessary.
-- Michael Hanke <michael.hanke@gmail.com> Thu, 14 Aug 2008 13:14:53 +0200
fsl (4.0.4-2) unstable; urgency=low
* Alternatively use octave3.0-headers (instead of just octave2.1-headers)
package to determine octave paths.
-- Michael Hanke <michael.hanke@gmail.com> Wed, 21 May 2008 09:20:29 +0200
fsl (4.0.4-1) unstable; urgency=low
* New bugfix release.
* Install missing IRTK configuration, which are not covered by the IRTK
liccense.
-- Michael Hanke <michael.hanke@gmail.com> Tue, 01 Apr 2008 11:04:19 +0200
fsl (4.0.3-2) unstable; urgency=low
* Applied upstream patch to fix some problems with boolean commandline
options.
-- Michael Hanke <michael.hanke@gmail.com> Sat, 09 Feb 2008 13:15:21 +0100
fsl (4.0.3-1) unstable; urgency=low
* New upstream release. Some bugfixes in bet2 and possum.
* Removed all fftw-related stuff from the build-dependencies. Apparently it
is not necessary anymore. Thanks to Paul Brossier for reporting
(Closes: #460270).
-- Michael Hanke <michael.hanke@gmail.com> Wed, 23 Jan 2008 17:09:38 +0100
fsl (4.0.2-3) unstable; urgency=low
* Fixed some bugs for GCC 4.3 compatibility. * Updated build-dependencies for libnifti transition.
-- Michael Hanke <michael.hanke@gmail.com> Sat, 05 Jan 2008 15:26:59 +0100
2007
fsl (4.0.2-2) unstable; urgency=low
* Refurbished debian/rules. Now honours 'noopt' and builds with debugging
symbols by default.
* Make Debian diff less intrusive by moving more logic into debian/rules.
* Improve LD_LIBRARY_PATH handling by preventing trailing colons.
* Let fsl-doc depend on fslview-doc to prevent dangling symlink.
* Fixed location of lintian override.
* Updated and completed list of licenses in debian/copyright.
* Removed empty directories from the fsl-doc package.
* Placed fsl-doc package in section non-free/doc.
* Bumped Standard version to 3.7.3 -- no changes necessary.
-- Michael Hanke <michael.hanke@gmail.com> Fri, 21 Dec 2007 10:56:09 +0100
fsl (4.0.2-1) unstable; urgency=low
* New upstream bugfix release.
- Susan: multiple performance improvements
- SienaX: bugfix in sienax regarding the -lm option
- Avwutils: minor fixes to fslmaths and fslsplit
- Feat5: multiple minor fixes
- Film: minor fix
- Flame: bugfix in the multiple-group-variances estimation
- Fdt: minor changes and fixes
- Miscvis: fixed Renderstats gui
* Use new-style Homepage field in debian/control.
* Replace deprecated 'Source-Version' substvar with 'source:Version' in
debian/control.
* Removed executable permissions from all '.gif' files.
-- Michael Hanke <michael.hanke@gmail.com> Fri, 16 Nov 2007 10:13:17 +0100
fsl (4.0.1-3) unstable; urgency=low
* Added bc and dc to the dependencies. * Adjusted package build-deps to new libfftw3-dev package in Debian lenny.
-- Michael Hanke <michael.hanke@gmail.com> Mon, 12 Nov 2007 22:38:01 +0100
fsl (4.0.1-2) unstable; urgency=low
* Added a lintian override for the Runtcl syntax warning. This file is
actually a mixed sh and tclsh script.
-- Michael Hanke <michael.hanke@gmail.com> Wed, 5 Sep 2007 22:28:01 +0200
fsl (4.0.1-1) unstable; urgency=low
* New upstream bugfix release. * BET can now store the brain surface in VTK format.
-- Michael Hanke <michael.hanke@gmail.com> Sat, 01 Sep 2007 10:53:23 +0200
fsl (4.0.0-2) unstable; urgency=low
* Bugfix: fsl_sub made use of non-POSIX operator while interpreter was set
to /bin/sh. This caused the script to fail on Ubuntu systems that have
dash as their default shell.
-- Michael Hanke <michael.hanke@gmail.com> Thu, 30 Aug 2007 08:44:46 +0200
fsl (4.0.0-1) unstable; urgency=low
* New upstream release.
* Repackaged the FSL source tarball due to its size and the mixture of
licenses and split it into three independent source packages: 'fsl' contains
all non-free source code, 'fslview' contains FSLView and all other
DFSG-compliant sources and 'fsldata' contains the arch-independent datasets
(>900MB).
* Conflict with old fsl-fslview package and depend on the successor
'fslview'.
* Debian diff is now handled with a GIT repository. Build-dependency to
dpatch is obsolete.
* All internal libraries are compiled as shared libraries with
-W,l--no-undefined to be able to detect unresolved symbols that have been
an issue in the past. This also reduces the size of the binary package
significantly.
* FSL now uses libfslio, libniftiio and the im* tools from the corresponding
Debian packages instead of a compiling a local copy.
* Added 'dicomnifti' to the list of the suggested packages.
* Removed obsolete runtime dependency to tix, imagemagick and gnuplot.
-- Michael Hanke <michael.hanke@gmail.com> Fri, 17 Aug 2007 14:38:14 +0200
fsl (3.3.11-2) unstable; urgency=low
* Removed manpage links of FSL internal cmdline tools to prevent namespace
conflicts.
* Disabled FSL developer variables in /etc/fsl/fsl.conf to prevent error
messages when the file is sourced, but no compiler is installed.
* Added wrapper script (similar to ssh-argv0) to be able to automatically
source the FSL configuration on startup. This adds the opportunity to
include menu and .desktop files.
* Add proper menu and .desktop files for all FSL GUI applications.
* Added build-depend on imagemagick to be able to generate a 32x32 icon for
the FSL menu entries from included artwork.
* Renamed fsl config file from fsl.conf to fsl.sh. This is done to reduce
the differences between upstream releases and the Debian package.
A preinst script was added to move old config files on package upgrades.
The new behavior is noted in debian/NEWS.
* Added XS-Vcs-Svn and XS-Vcs-Browser to debian/control.
* Added comments about the CEPHES and Susan licensing to debian/copyright.
* Added a link to the FSLView binary to /usr/share/fsl/bin, because Nudge
was complaining about not beeing able to find it. Thanks to Yaroslav
Halchenko for pointing at this issue.
* Added manpage for fslview.
-- Michael Hanke <michael.hanke@gmail.com> Tue, 01 May 2007 19:53:06 +0200
fsl (3.3.11-1) unstable; urgency=low
* New upstream release. Fixes another minor randomize bug.
-- Michael Hanke <michael.hanke@gmail.com> Sat, 31 Mar 2007 19:32:42 +0200
fsl (3.3.10-1) unstable; urgency=low
* New upstream release. Fixes a bug in randomise.
-- Michael Hanke <michael.hanke@gmail.com> Fri, 16 Mar 2007 18:38:08 +0100
fsl (3.3.9-1) unstable; urgency=low
* New upstream release.
-- Michael Hanke <michael.hanke@gmail.com> Fri, 16 Feb 2007 13:03:14 +0100
fsl (3.3.8-1) unstable; urgency=low
* New upstream release.
* Minor bugfixes fixes to avwmerge++ and avwmaths++.
* Modified FSLView makefile to fix FTBFS due to missing fslio linrary.
* Added debian/backports to the source package. It contains a patch that
disables the fslview package when backporting to sarge using pbuilder-ssh.
-- Michael Hanke <michael.hanke@gmail.com> Fri, 12 Jan 2007 10:42:06 +0100
2006
fsl (3.3.7-3) unstable; urgency=low
* Added missing changelog entries for 3.3.7-2.
* Renamed the fsl-sbrain package to fsl-data.
* Added missing licenses to debian/copyright.
* Moved default FEAT configuration to /etc/fsl.
* Temporarily added libvtk5-qt3 to the build-depends to work-around
bug #389521.
-- Michael Hanke <michael.hanke@gmail.com> Mon, 30 Oct 2006 11:02:14 +0100
fsl (3.3.7-2) unstable; urgency=low
* Include FSLView docs in the fsl-doc package.
* Added patch to fix FTBFS due to an issue with template instantiation.
Thanks to Yaroslav Halchenko.
* Minor enhancement for FSLView compilation (force Qt3 with Qt4 also
present).
* Fixed missing example_FA_target in $FSLDIR/etc/standard.
-- Michael Hanke <michael.hanke@gmail.com> Sat, 9 Sep 2006 09:51:41 +0200
fsl (3.3.7-1) unstable; urgency=low
* New upstream release. * Added FSLView package.
-- Michael Hanke <michael.hanke@gmail.com> Sun, 30 Jul 2006 13:56:52 +0200
fsl (3.3.6-2) unstable; urgency=low
* Bumped Standards-Version to 3.7.2; no changes necessary.
-- Michael Hanke <michael.hanke@gmail.com> Mon, 3 Jul 2006 21:37:31 +0200
fsl (3.3.6-1) unstable; urgency=low
* New upstream release.
-- Michael Hanke <michael.hanke@gmail.com> Sun, 18 Jun 2006 08:18:51 +0200
fsl (3.3.5-2) unstable; urgency=low
* Added patch for gcc4.1 compatibility (Thanks to Mark Jenkinson).
-- Michael Hanke <michael.hanke@gmail.com> Sat, 10 Jun 2006 09:02:11 +0200
fsl (3.3.5-1) unstable; urgency=low
* New upstream release
-- Michael Hanke <michael.hanke@gmail.com> Tue, 2 May 2006 09:32:13 +0200
fsl (3.3.4-1) unstable; urgency=low
* New upstream release (missed 3.3.3). FSLView source code is now included,
but FSLView still cannot be build, because it build-depends on VTK 5.0.
No Debian package of this version is currently available.
* Added build conflict to libnifti0-dev. FSL sources contain an incompatible
fork of this library. This situation should vanish with the next major
release.
-- Michael Hanke <michael.hanke@gmail.com> Wed, 26 Apr 2006 10:51:08 +0200
fsl (3.3.2-1) unstable; urgency=low
* New upstream release.
* Moved all binaries to /usr/lib/fsl after experiencing name clashes with
other packages.
-- Michael Hanke <michael.hanke@gmail.com> Tue, 11 Apr 2006 16:20:27 +0200
fsl (3.3.0-1) unstable; urgency=low
* New upstream version. * Split standard space brain data into a separate package. * Made matlab m-files available for Octave.
-- Michael Hanke <michael.hanke@gmail.com> Sat, 18 Mar 2006 23:56:31 +0100
fsl (3.2beta-4) unstable; urgency=low
* Added the possibility to define additional compiler flags for
arch-dependend optimization by defining them in the DEB_ARCH_OPT_FLAGS
environment variable.
-- Michael Hanke <michael.hanke@gmail.com> Thu, 23 Feb 2006 20:50:57 +0100
fsl (3.2beta-3) unstable; urgency=low
* Split the dpatch patches into several smaller parts.
* Added patches to replace most of the deprecated headers.
* Improved patch to FAST for GCC4 compatiility.
* Removed libcprob and newran from the tarball, since they are unnecessary
for building FSL.
* Added patch to libvis that makes it possible to use a dependency to the
official Debian libgdchart-gd2 package instead of compiling the custom
version from the FSL source tarball.
* Switch package dependency for newmat to a package that provides a shared
library (Thanks to Philippe Coval).
-- Michael Hanke <michael.hanke@gmail.com> Sun, 19 Feb 2006 22:05:24 +0100
fsl (3.2beta-2) unstable; urgency=low
* Added build-dependency to libnewmat10-dev and stopped compiling the
included version.
-- Michael Hanke <michael.hanke@gmail.com> Mon, 2 Jan 2006 14:46:14 +0100
2005
fsl (3.2beta-1) unstable; urgency=low
* Initial Release (Closes: #332666). * Upstream tarball was repackaged, because it contained lots of binaries of software available as proper Debian packages (see get-orig-source target in debian/rules). * Includes some fixes for compatibility with GCC4 (thanks to Andre Piel).
-- Michael Hanke <michael.hanke@gmail.com> Wed, 28 Dec 2005 17:11:34 +0100