2009
theseus (1.4.3-2) unstable; urgency=low
* debian/patches/10_kbsd.patch: Correctly applied patch from
Cyril (sorry for mixing this up)
Closes: #542879
-- Andreas Tille <tille@debian.org> Thu, 03 Sep 2009 08:49:22 +0200
theseus (1.4.3-1) unstable; urgency=low
[Andreas Tille]
* New upstream version
Closes: #534630
* debian/control
- Added myself to uploaders
- debhelper 7
- Build-Depends: libtool
- Standards-Version: 3.8.3 (no changes needed)
* Switched to quilt (affects debian/patches/*, debian/control,
debian/rules)
* Added Suggests: clustlaw, mafft, t-coffee, kalign, dialign
because these are called in theseus_align
* Use debian/{docs,manpages, examples} instead of arguments of
the debhelper installers to enable short rules file
* Re-enabled patch for theseus_align and do not tweak upstream
tarball just to s?usr/local/bin?usr/bin?
* debian/patches/200-make.inc.patch: Use ar directly to to avoid
problems with libtool, drop -arch command line options to gcc
which let compilation fail
* debian/README.Debian: Removed paragraph about theseus_align
because this is now shipped in upstream tarball
* debian/patches/10_kbsd.patch: fix the FTBFS problem reported by
Cyril Brulebois <kibi@debian.org> (thanks to Cyril for the patch)
Closes: #542879
[Morten Kjeldgaard]
* Fix FTBFS on certain platforms that lack the Atlas libraries
by using lapack-dev in Build-Depends. This will pull in Atlas
on the relevant platforms, otherwise not.
-- Andreas Tille <tille@debian.org> Mon, 31 Aug 2009 14:50:19 +0200
2008
theseus (1.3.9-1) unstable; urgency=low
* New upstream release, first upload to Debian.
-- Morten Kjeldgaard <mok0@ubuntu.com> Sun, 16 Nov 2008 22:36:36 +0100
theseus (1.1.5-0ubuntu3) intrepid; urgency=low
* gfortran transition for intrepid, atlas3-base -> libatlas3-base.
-- Morten Kjeldgaard <mok0@ubuntu.com> Thu, 04 Sep 2008 23:20:52 +0200
theseus (1.1.5-0ubuntu2) hardy; urgency=low
* debian/rules: FTBFS on all archs but i386, due to missing
binary-arch target (LP: #181359)
* Removed redundant libraries.
-- Morten Kjeldgaard <mok@bioxray.dk> Tue, 08 Jan 2008 22:35:42 +0100
2007
theseus (1.1.5-0ubuntu1) hardy; urgency=low
* Initial release (LP: #173506)
* The upstream tarball has been versioned as 1.1.5 (not versioned upstream)
The get-orig-source target in debian/rules can be used for this purpose
once the changelog has been edited to contain the right version
* Patch to theseus.1 and theseus_align.1
- fix incorrect .TH line in theseus.1
- fix multiple instances of hyphen (-) to minus (\-)
* Patch on thesus_align.sh. The script is patched to find
programs in /usr/bin. The script makes use of the
multiple sequence alignment program muscle, which is available
from universe.
* Patch make.inc to provide correct compiler switches.
* A script (getexamples) is provided to show the user how (s)he can
download the data in examples/
-- Morten Kjeldgaard <mok@bioxray.dk> Sun, 02 Dec 2007 15:53:15 +0100