2009
python-biopython (1.52-1) unstable; urgency=low
* New upstream release.
-- Philipp Benner <philipp@debian.org> Wed, 30 Sep 2009 10:16:03 +0000
python-biopython (1.51final-2) unstable; urgency=low
* Merged patch from ubuntu to make the package ready for
python2.6 (Closes: #543236).
-- Philipp Benner <philipp@debian.org> Mon, 24 Aug 2009 09:29:27 +0000
python-biopython (1.51final-1) unstable; urgency=low
* New upstream release
* debian/control: suggesting muscle, clustalw, mafft, emboss, and
blast2 for installation
-- Philipp Benner <philipp@debian.org> Wed, 19 Aug 2009 10:41:19 +0000
python-biopython (1.51b-2) unstable; urgency=low
* Dropped python-biopython-martel. * Dropped dependency on python-egenix-mxtexttools. * Removed DM-Upload-Allowed: yes.
-- Philipp Benner <philipp@debian.org> Tue, 11 Aug 2009 19:47:52 +0000
python-biopython (1.51b-1) unstable; urgency=low
* New upstream release
* debian/control:
- moved python-martel back to section python (python packages do not
use section oldlibs)
* debian/patches/02-fix-wise-test.patch
- removed (merged with upstream)
* debian/control:
- Changed the description of python-biopython-sql according to Peter Cock's
suggestions.
[Charles Plessy]
-- Philipp Benner <pbenner@uni-osnabrueck.de> Sat, 27 Jun 2009 15:14:52 +0000
python-biopython (1.49-1) unstable; urgency=low
* New upstream release.
- uses NumPy rather than its precursor Numeric (Closes: #478457)
- Martel, Bio.Mindy, Bio.MetaTool, Bio.EUtils, Bio.Saf, Bio.NBRF, and
Bio.IntelliGenetics are deprecated.
- Bio.PubMed and the online code in Bio.GenBank are now considered obsolete
and will be deprecated in a future release.
- Bio.Fasta is also considered to be obsolete and will eventually be
deprecated.
* debian/control:
- added myself as Uploader.
- depends on python-numpy instead of python-numeric-ext.
- moved python-martel to oldlibs section, priority extra as it is
deprecated, and indicate this in the description.
- build-depend on python-mysqldb and wise for the tests after building.
* Use Debhelper 7 (debian/co{ntrol,mpat}).
* debian/copyright: added myself to the Hall of Fame and updated to latest
draft of the machine-readable format.
* debian/watch: makes beta versions lower by prepending a tilde between
numbers and letters (1.49b -> 1.49~b).
* mmCIF support enabled:
- debian/patches/01-enable-mmCIF.patch: as the name indicates ;)
- debian/rules: patch and unpatch through /usr/share/quilt/quilt.make.
- debian/control: build-depends on quilt.
* debian/python-biopython-doc.doc-base: corrected index name that was changed
upstream.
* debian/patches/02-fix-wise-test.patch: prevents tests failing with Debian's
version of Wise.
* debian/rules: perform tests after build.
-- Charles Plessy <plessy@debian.org> Fri, 23 Jan 2009 22:19:50 +0900
2008
python-biopython (1.47-1) unstable; urgency=low
* New upstream release * Standards version 3.8.0
-- Philipp Benner <pbenner@uni-osnabrueck.de> Sun, 03 Aug 2008 14:29:33 +0200
python-biopython (1.45-3) unstable; urgency=low
* Removed dependency on python-numeric-ext since it is already in
the recommends field
-- Philipp Benner <pbenner@uni-osnabrueck.de> Sun, 01 Jun 2008 10:34:48 +0200
python-biopython (1.45-2) unstable; urgency=low
* Add dependency on python-numeric-ext (Bio.PDB uses MLab from this package)
-- Morten Kjeldgaard <mok@bioxray.au.dk> Wed, 23 Apr 2008 00:01:16 +0200
python-biopython (1.45-1) unstable; urgency=low
* New upstream release. * Added doc-base.
-- Philipp Benner <pbenner@uni-osnabrueck.de> Sat, 29 Mar 2008 12:20:41 +0100
python-biopython (1.44-3) unstable; urgency=low
* New maintainer e-mail address. * debian/control: Added DM-Upload-Allowed: yes.
-- Philipp Benner <pbenner@uni-osnabrueck.de> Mon, 14 Jan 2008 18:35:18 +0100
2007
python-biopython (1.44-2) unstable; urgency=low
* Moved suggested package python-numeric-ext to recommends field
(Closes: #452379).
* Moved wise from recommends to suggests field.
* Removed package tags from debian/control.
* Added homepage field to debian/control.
* Changed maintainer to Debian-Med Packaging Team.
* Removed .DS_Store.gz file from doc package.
-- Philipp Benner <mail@philipp-benner.de> Thu, 22 Nov 2007 13:35:00 +0100
python-biopython (1.44-1) unstable; urgency=low
* New upstream release. * Machine interpretable copyright file.
-- Philipp Benner <mail@philipp-benner.de> Fri, 16 Nov 2007 16:49:11 +0100
python-biopython (1.43-2) unstable; urgency=low
* Rebuild for python-2.5 support (Closes: #424025).
-- Philipp Benner <mail@philipp-benner.de> Thu, 14 Jun 2007 21:40:18 +0200
python-biopython (1.43-1) unstable; urgency=low
* New upstream release * Adapted debian-med tags
-- Philipp Benner <mail@philipp-benner.de> Tue, 27 Mar 2007 17:45:58 +0200
2006
python-biopython (1.42-2) unstable; urgency=low
* uscan support * package tags
-- Philipp Benner <mail@philipp-benner.de> Sat, 9 Sep 2006 14:39:18 +0200
python-biopython (1.42-1) unstable; urgency=low
* New upstream release
-- Philipp Benner <mail@philipp-benner.de> Sat, 22 Jul 2006 01:30:51 +0200
python-biopython (1.41-2.1) unstable; urgency=low
* Non-maintainer upload. * Update package to the last python policy (Closes: #373515).
-- Pierre Habouzit <madcoder@debian.org> Fri, 30 Jun 2006 13:45:39 +0200
python-biopython (1.41-2) unstable; urgency=low
* suggests python-numeric-ext * now with KDTree
-- Philipp Benner <mail@philipp-benner.de> Mon, 20 Feb 2006 21:02:18 +0100
2005
python-biopython (1.41-1) unstable; urgency=low
* New upstream release
-- Philipp Benner <mail@philipp-benner.de> Sat, 5 Nov 2005 20:15:03 +0100
python-biopython (1.40b-3) unstable; urgency=low
* now using compatibility level 4 * removed obsolete dependencies (closes: #328142)
-- Philipp Benner <mail@philipp-benner.de> Wed, 14 Sep 2005 12:06:06 +0200
python-biopython (1.40b-2) unstable; urgency=low
* Function `mmcif_get_string' implicitly converted to pointer
(closes: #326403)
* now standards version 3.6.2
-- Philipp Benner <mail@philipp-benner.de> Wed, 7 Sep 2005 09:53:30 +0200
python-biopython (1.40b-1) unstable; urgency=low
* new release * dropped support for python2.2
-- Philipp Benner <mail@philipp-benner.de> Tue, 05 Apr 2005 20:55:59 +0200
2004
python-biopython (1.30-2) unstable; urgency=low
* Fixed bugs in debian/rules and debian/control which prevented
porting the package.
* Using -fPIC to build shared lib KDTree. (closes: #278959)
-- Philipp Benner <mail@philipp-benner.de> Sun, 10 Oct 2004 19:48:04 +0200
python-biopython (1.30-1) unstable; urgency=low
* Initial Release. (closes: #157402)
-- Philipp Benner <mail@philipp-benner.de> Tue, 21 Sep 2004 20:02:00 +0200