pymol (1.1~beta3-3) unstable; urgency=low [ LI Daobing ] * debian/pymol.desktop: fix lintian info desktop-entry-contains-encoding-key. [ Michael Banck ] * debian/control (Build-Depends): Added g++-4.2 on arm, armel. * debian/rules: Use g++-4.2 on arm, armel; by Adeodato Simo; closes: #478034. -- Michael Banck Sat, 26 Apr 2008 16:07:33 +0200 pymol (1.1~beta3-2) unstable; urgency=low * debian/patches/16_pymem_del.dpatch: Fix usage of different memory APIs; by Barry deFreese; closes: #468989. -- Michael Banck Sun, 16 Mar 2008 14:26:06 +0100 pymol (1.1~beta3-1) unstable; urgency=low * New upstream prerelease. [ Michael Banck ] * debian/patches/15_fix_scripting_mode.dpatch: Fix the scripting (command-line) mode; by Anders Norgaard; closes: #459644. [ LI Daobing ] * debian/control: - add me to uploaders. - bump standards version to 3.7.3, nothing need change. * debian/rules: remove build directory and other two files in clean. (Closes: #442706) * add a new 32x32 xpm icon: - debian/pymol-32.xpm: added. (resize from debian/pymol.xpm) - debian/rules: install pymol-32.xpm. - debian/pymol.menu: use 32x32 xpm icon. * debian/rules: don't install empty directory. * fix lintian warning: script-not-executable - debian/patches/14_script_not_executable.dpatch: added. - debian/patches/00list: updated. -- Michael Banck Fri, 15 Feb 2008 20:38:42 +0100 pymol (1.0r2-1) unstable; urgency=low * New upstream release. [ Daniel Leidert ] * debian/control: Added Homepage and XS-Vcs-* fields. Added get-orig-source target to retrieve source from SVN. (Build-Depends): Raised debhelper compat level. * debian/pymol.menu (section): Menu section transition. * debian/rules: DH_COMPAT is obsolete. Better use debian/compat. Raised level to debhelper 5. * debian/watch: Fixed. Upstream doesn't provide tarballs anymore, so we check their SVN. [ Michael Banck ] * debian/patches/13_activate_vmd_plugin.dpatch: Build the VMD plugin, by Martin Hoefling. * debian/control (Maintainer): Change to Debichem Team. -- Michael Banck Fri, 12 Oct 2007 15:47:49 +0200 pymol (1.0-1) unstable; urgency=low * New upstream release. [ Daniel Leidert ] * debian/watch: Added. [ LI Daobing ] * debian/rules: lintian doesn't like "-$(MAKE) clean", see bug#325372 [ Michael Banck ] * debian/README.Debian: Remove link to obsolete manual and mention http://www.pymolwiki.org/ as documenation source. * debian/rules (dh_installchangelogs): CHANGES got renamed to ChangeLog. * debian/rules (dh_installdocs): Include AUTHORS. * debian/patches/05_examples_data_path.dpatch: Updated. * debian/pymol.launch.in: Remove quotes around $*; closes: #409188. * debian/rules (clean): Don't fail if Makefile is not present. * debian/patches/12_align_matrix.dpatch: New patch to fix patch for align command. Based on a patch by Charles Plessy and further input by Thomas Gaillard; closes: #385550. -- Michael Banck Thu, 5 Jul 2007 13:13:00 +0200 pymol (0.98+0.99rc8-1) unstable; urgency=low * New upstream release candidate. [ Michael Banck ] * debian/rules (install): Install builder ring bitmaps into /usr/share/pymol/pmg_tk/bitmaps/builder; closes: #422229. * debian/patches/09_chempy_data_path.dpatch: Updated. * debian/patches/05_examples_data_path.dpatch: Likewise. * debian/patches/09_chempy_data_path.dpatch: Updated to fix the pathname for the mutagenesis wizard; closes: #410108. [ LI Daobing ] * debian/pymol.desktop: fix warning for desktop-file-validate. -- Michael Banck Tue, 8 May 2007 18:02:59 +0200 pymol (0.98+0.99rc6-2) unstable; urgency=low * debian/control (Recommends): Added apbs. * Sync with Ubuntu; closes: #379508, #378825. * Acknowledge NMU; closes: #380910. -- Michael Banck Tue, 26 Sep 2006 00:08:41 +0200 pymol (0.98+0.99rc6-1.1) unstable; urgency=low * Non-maintainer upload. * Update packate to the last python policy (Closes: 380910): + use dh_pysupport. + add 11_fix__cmd_import.dpatch to fix an import that does not behaves well. + adapt the wrapper to the new path's. * Bump Standards-Version to 3.7.2. * Bump DH_COMPAT to 4. * Fix more files that have wrong executable bits set. -- Pierre Habouzit Wed, 30 Aug 2006 11:09:00 +0200 pymol (0.98+0.99rc6-1ubuntu1) edgy; urgency=low * Re-merge with Debian -- Barry deFreese Sun, 23 Jul 2006 17:39:15 -0400 pymol (0.98+0.99rc6-1) unstable; urgency=low * New upstream release candidate. * debian/patches/02_test-suite.dpatch: Resync. * debian/patches/03_povray.dpatch: Likewise. * debian/patches/05_examples_data_path.dpatch: Likewise. * debian/patches/09_chempy_data_path.dpatch: Likewise. * debian/control (Build-Depends): Added libfreetype6-dev. -- Michael Banck Fri, 30 Jun 2006 02:05:00 +0200 pymol (0.98-1ubuntu2) dapper; urgency=low * Merged existing desktop files and updated to current freedestkop standards. Closes Ubuntu #36435 -- Zygmunt Krynicki Sat, 25 Mar 2006 01:22:38 +0100 pymol (0.98-1ubuntu1) breezy; urgency=low * Resynchronise with Debian. * Sponsored for Barry DeFreese (Closes: Ubuntu #12487) -- Stephan Hermann Sun, 24 Jul 2005 11:43:59 +0200 pymol (0.98-1ubuntu2) dapper; urgency=low * Merged existing desktop files and updated to current freedestkop standards. Closes Ubuntu #36435 -- Zygmunt Krynicki Sat, 25 Mar 2006 01:22:38 +0100 pymol (0.98-1ubuntu1) breezy; urgency=low * Resynchronise with Debian. * Sponsored for Barry DeFreese (Closes: Ubuntu #12487) -- Stephan Hermann Sun, 24 Jul 2005 11:43:59 +0200 pymol (0.98-1) unstable; urgency=low * The 'Fixing Ubunt^W^WPreparing for Python Transition' Release. * New upstream release. * debian/patches/03_povray.dpatch: Updated. * debian/rules (install): Create application-registry directory. * debian/patches/02_test-suite.dpatch (pymol-test): Do not hardcode python version. * debian/pymol.launch: Renamed to ... * debian/pymol.launch.in: ... this, and generalize occurances of python versions to @PYTHON_VERSION@. * debian/rules (debian/pymol.launch): New rule, processing debian/pymol.launch.in. * debian/rules (build-stamp): Depend on debian/pymol.launch. -- Michael Banck Sun, 3 Jul 2005 12:56:15 +0200 pymol (0.97-3) unstable; urgency=low * debian/control (Depends): Use ${python:Depends} instead of exlicitely specifying the current default python version. * (Build-Depends): Use python-dev and python-numeric rather than specific versions. * debian/pymol.dirs: Removed. * debian/rules (install): Grouped creation of directories together and create missing directories under $(BUILD_DIR)/usr/share as well as $(BUILD_DIR)/usr/bin. -- Michael Banck Tue, 5 Apr 2005 13:14:24 +0200 pymol (0.97-2) unstable; urgency=low * debian/patches/09_chempy_data_path.dpatch: Include relevant chempy changes from the old 01_data_path.dpatch and adopt it slightly to use CHEMPY_PATH. Reported by Christoph Scheurer. * debian/pymol.launch: Use $CHEMPY_PATH instead of $CHEMPY_DATA_PATH. -- Michael Banck Sat, 8 Jan 2005 15:50:45 +0100 pymol (0.97-1) unstable; urgency=low * New upstream release. * debian/patches/10_png_includes: Dropped, included upstream. * debian/patches/00list (10_png_includes.dpatch): Removed. * debian/control (Build-Depends): Added python; closes: #261040. * debian/pymol.launch (PYMOL_PATH): New environment variable to work around upstream breakage for the time being. -- Michael Banck Fri, 6 Aug 2004 03:02:32 +0200 pymol (0.95-1) unstable; urgency=low * New upstream release. * (layer0/MyPNG.c): Reorder #includes in MyPNG.c. (10_png_includes.dpatch) * debian/patches/00list (10_png_includes.dpatch): Added. * debian/control (Build-Depends): Drop gcc-2.95 again, #229080 does not show up anymore with th current gcc. * debian/rules (CC): Removed. -- Michael Banck Wed, 7 Apr 2004 21:34:02 +0200 pymol (0.93-5) unstable; urgency=low * debian/control (Build-Depends): Really only depend on gcc-2.95 on ia64 and hppa; closes: #235709. * debian/rules (PYMOL_PATH): New variable, to make sure the test- suite is able to find its data files. -- Michael Banck Tue, 2 Mar 2004 15:20:32 +0100 pymol (0.93-4) unstable; urgency=low * debian/rules: Only set CC=2.95 if not building for ia64 or hppa. * debian/control: Do not Build-Depend on gcc-2.95 on ia64 and hppa; closes: #235658. -- Michael Banck Mon, 1 Mar 2004 23:04:21 +0100 pymol (0.93-3) unstable; urgency=low * debian/control (Build-Depends): Revert to gcc-2.95 to evade segmen- tation faults when rendering lines with binaries built with gcc-3.x. * debian/rules: Export CC=gcc-2.95; closes: #229080. -- Michael Banck Sun, 22 Feb 2004 11:12:13 +0100 pymol (0.93-2) unstable; urgency=low * Fix environment-variable handling in modules/pymol/wizards/ mutagenesis.py; closes: #225590. (09_chempy_data_path.dpatch) * 05_examples_data_path.dpatch: Updated to find 1hpv.pdb for the 'Scripted Animation' demo. -- Michael Banck Sat, 3 Jan 2004 23:08:13 +0100 pymol (0.93-1) unstable; urgency=low * New upstream release. * debian/patches/00list (01_data_path.dpatch): Dropped, fixed upstream. (07_setup.py._opengl-libs.dpatch): Likewise. (08_setup.py_missing_file.dpatch): Likewise. * debian/pymol.launch: Changed $PYMOL_DATA_PATH to $PYMOL_DATA, in order to follow upstream. -- Michael Banck Sun, 2 Nov 2003 12:06:10 +0100 pymol (0.90-2) unstable; urgency=low * 01_data_path.dpatch: - Factor out examples/-directory into 05_examples_data_path.dpatch. - Factor out patch for modules/chempy/cex.py into 06_remove_shebang.dpatch. * debian/pymol.launch: Pass command-line arguments to pymol through the wrapper script, thanks to Gabor Tusnady for reporting this. * setup.py (pyogl_libs): Added "GL","GLU","glut" and "png"; closes: #214026. (07_setup.py._opengl-libs.dpatch) * (setup Extension): Added layer0/MemoryCache.c. (08_setup.py_missing_file.dpatch) -- Michael Banck Sat, 4 Oct 2003 21:54:58 +0200 pymol (0.90-1) unstable; urgency=low * 02_test-suite.dpatch: Updated for python2.3, thanks to Matt Kraai; closes: #207706, #207711 * 04_Rules.make.dpatch: Activated * debian/rules: Remove Rules.make linking/removing, handled by dpatch now -- Michael Banck Mon, 1 Sep 2003 19:16:02 +0200 pymol (0.90-0.1) unstable; urgency=low * NMU * New upstream release. * Update for python2.3 (closes: #206302). -- Matthias Klose Thu, 28 Aug 2003 21:04:16 +0200 pymol (0.88-1) unstable; urgency=low * New upstream release; closes: #196159 * debian/pymol.menu: Moved menu entry from Math to Science section * modules/pymol/povray.py: Fixed command-line again * debian/control, debian/rules: Switch to dpatch -- Michael Banck Mon, 16 Jun 2003 18:16:41 +0200 pymol (0.86-3) unstable; urgency=low * renamed said hacked pymol script to test/pymol-test * debian/rules: make test/pymol-test executable * modules/chempy/cex.py: Removed !# from top, this is no script as far as pymol is concerned -- Michael Banck Mon, 13 Jan 2003 17:36:24 +0100 pymol (0.86-2) unstable; urgency=low * test/run: Fixed test-suite to import the pymol modules under debian/pymol by providing a hacked pymol script in test/ -- Michael Banck Mon, 13 Jan 2003 14:36:48 +0100 pymol (0.86-1) unstable; urgency=low * New upstream release; closes: #175881 - Patch for pmw got applied upstream; closes: #160584 - Hacked around $PYMOL_PATH once more in various places - Followed Upstream's layout of the data a bit by using /usr/share/pymol and /usr/share/chempy along with their subdirectories respectively * test/run: display the diff in case the test failed * debian/rules: Use setup.py in build: and clean: target now * debian/control: Build with libpng12-0-dev now -- Michael Banck Mon, 13 Jan 2003 01:16:35 +0100 pymol (0.82-2) unstable; urgency=low * Switched to python-2.2; closes: #158931 * modules/pymol/povray.py: Changed PovRay-command from x-povray to povray; closes: #151190 * debian/control: Bumped Standards-Version to 3.5.6.1 -- Michael Banck Mon, 16 Sep 2002 01:11:57 +0200 pymol (0.82-1) unstable; urgency=low * New upstream release * Included pymol.xpm icon for menu-system, fixing the menu entry; closes: #148400 * debian/control: Removed the Suggestion of pymol-doc for now as the manual is out of date, documented its website in README.Debian instead. Still no manpage, sorry * Included splash.png in /usr/share/pymol and changed modules/pymol/invocation.py accordingly * debian/rules: Triggered the test-run * modules/pmg_tk/Demo.py: Changed all cmd.load to look for the .pdb-files in /usr/share/pymol/demo and installed those files there; closes: #148153, #150070 * debian/control: Trimmed Build-Depends: -- Michael Banck Fri, 21 Jun 2002 00:45:18 +0200 pymol (0.80-3) unstable; urgency=low * Actually compile shared libraries with -fPIC this time -- Michael Banck Sat, 25 May 2002 13:08:19 +0200 pymol (0.80-2) unstable; urgency=low * Suggests: pymol-doc now * Build shared libraries with -fPIC; closes: #148118 -- Michael Banck Sat, 25 May 2002 09:35:51 +0200 pymol (0.80-1) unstable; urgency=low * Initial Release; closes: #146024 * Moved data files to /usr/share/pymol * Removed need for environment variables during execution, hardcoding the paths for the moment * Added a link to undocumented.1 for pymol.1 for the moment -- Michael Banck Sun, 19 May 2002 15:56:00 +0200