2008
pymol (1.1-1) unstable; urgency=low
* New upstream release. [ Daniel Leidert (dale) ] * debian/control (Uploaders): Added myself. * debian/pymol.1: Added basic man-page for pymol (closes: #148399). * debian/rules (binary-arch): Install man-page for pymol. * debian/patches/11_fix__cmd_import.dpatch: Added a short description based on the changelog entry to satisfy lintian. [ Michael Banck ] * debian/patches/17_cmyk_png_data_path.dpatch: Fix the location lookup for cmyk.png; closes: #490067. * debian/pymolRef.tex: New file, taken from pymol community wiki http://www.pymolwiki.org. * debian/copyright: Add GPLv2 notice for debian/pymolRef.tex. * debian/control (Build-Depends): Added texlive-latex-base. * debian/rules (build): Run pdflatex to create reference card from debian/pymolRef.tex. * (install): Copy it to $(BUILD_DIR)/usr/share/doc/pymol/pymol-ref-card.pdf. * (clean): Remove pdflatex created files. * debian/patches/12_align_matrix.dpatch: Removed, applied upstream. * debian/patches/15_fix_scripting_mode.dpatch: Likewise. * debian/patches/13_activate_vmd_plugin.dpatch: Refreshed. * debian/rules (install): Create $(BUILD_DIR)/usr/share/doc/pymol. * debian/control (Description): Updated. * debian/README.Debian: Removed entry from 19 May 2002.
-- Michael Banck <mbanck@debian.org> Wed, 23 Jul 2008 03:42:15 +0200
pymol (1.1~beta3-3) unstable; urgency=low
[ LI Daobing ]
* debian/pymol.desktop: fix lintian info
desktop-entry-contains-encoding-key.
[ Michael Banck ]
* debian/control (Build-Depends): Added g++-4.2 on arm, armel.
* debian/rules: Use g++-4.2 on arm, armel; by Adeodato Simo;
closes: #478034.
-- Michael Banck <mbanck@debian.org> Sat, 26 Apr 2008 16:07:33 +0200
pymol (1.1~beta3-2) unstable; urgency=low
* debian/patches/16_pymem_del.dpatch: Fix usage of different memory
APIs; by Barry deFreese; closes: #468989.
-- Michael Banck <mbanck@debian.org> Sun, 16 Mar 2008 14:26:06 +0100
pymol (1.1~beta3-1) unstable; urgency=low
* New upstream prerelease.
[ Michael Banck ]
* debian/patches/15_fix_scripting_mode.dpatch: Fix the scripting
(command-line) mode; by Anders Norgaard; closes: #459644.
[ LI Daobing ]
* debian/control:
- add me to uploaders.
- bump standards version to 3.7.3, nothing need change.
* debian/rules: remove build directory and other two files in clean.
(Closes: #442706)
* add a new 32x32 xpm icon:
- debian/pymol-32.xpm: added. (resize from debian/pymol.xpm)
- debian/rules: install pymol-32.xpm.
- debian/pymol.menu: use 32x32 xpm icon.
* debian/rules: don't install empty directory.
* fix lintian warning: script-not-executable
- debian/patches/14_script_not_executable.dpatch: added.
- debian/patches/00list: updated.
-- Michael Banck <mbanck@debian.org> Fri, 15 Feb 2008 20:38:42 +0100
2007
pymol (1.0r2-1) unstable; urgency=low
* New upstream release.
[ Daniel Leidert ]
* debian/control: Added Homepage and XS-Vcs-* fields. Added get-orig-source
target to retrieve source from SVN.
(Build-Depends): Raised debhelper compat level.
* debian/pymol.menu (section): Menu section transition.
* debian/rules: DH_COMPAT is obsolete. Better use debian/compat. Raised
level to debhelper 5.
* debian/watch: Fixed. Upstream doesn't provide tarballs anymore, so we
check their SVN.
[ Michael Banck ]
* debian/patches/13_activate_vmd_plugin.dpatch: Build the VMD plugin,
by Martin Hoefling.
* debian/control (Maintainer): Change to Debichem Team.
-- Michael Banck <mbanck@debian.org> Fri, 12 Oct 2007 15:47:49 +0200
pymol (1.0-1) unstable; urgency=low
* New upstream release.
[ Daniel Leidert ]
* debian/watch: Added.
[ LI Daobing ]
* debian/rules: lintian doesn't like "-$(MAKE) clean", see bug#325372
[ Michael Banck ]
* debian/README.Debian: Remove link to obsolete manual and mention
http://www.pymolwiki.org/ as documenation source.
* debian/rules (dh_installchangelogs): CHANGES got renamed to ChangeLog.
* debian/rules (dh_installdocs): Include AUTHORS.
* debian/patches/05_examples_data_path.dpatch: Updated.
* debian/pymol.launch.in: Remove quotes around $*; closes: #409188.
* debian/rules (clean): Don't fail if Makefile is not present.
* debian/patches/12_align_matrix.dpatch: New patch to fix patch for
align command. Based on a patch by Charles Plessy and further input
by Thomas Gaillard; closes: #385550.
-- Michael Banck <mbanck@debian.org> Thu, 5 Jul 2007 13:13:00 +0200
pymol (0.98+0.99rc8-1) unstable; urgency=low
* New upstream release candidate.
[ Michael Banck ]
* debian/rules (install): Install builder ring bitmaps into
/usr/share/pymol/pmg_tk/bitmaps/builder; closes: #422229.
* debian/patches/09_chempy_data_path.dpatch: Updated.
* debian/patches/05_examples_data_path.dpatch: Likewise.
* debian/patches/09_chempy_data_path.dpatch: Updated to fix the
pathname for the mutagenesis wizard; closes: #410108.
[ LI Daobing ]
* debian/pymol.desktop: fix warning for desktop-file-validate.
-- Michael Banck <mbanck@debian.org> Tue, 8 May 2007 18:02:59 +0200
2006
pymol (0.98+0.99rc6-2) unstable; urgency=low
* debian/control (Recommends): Added apbs. * Sync with Ubuntu; closes: #379508, #378825. * Acknowledge NMU; closes: #380910.
-- Michael Banck <mbanck@debian.org> Tue, 26 Sep 2006 00:08:41 +0200
pymol (0.98+0.99rc6-1.1) unstable; urgency=low
* Non-maintainer upload.
* Update packate to the last python policy (Closes: 380910):
+ use dh_pysupport.
+ add 11_fix__cmd_import.dpatch to fix an import that does not behaves
well.
+ adapt the wrapper to the new path's.
* Bump Standards-Version to 3.7.2.
* Bump DH_COMPAT to 4.
* Fix more files that have wrong executable bits set.
-- Pierre Habouzit <madcoder@debian.org> Wed, 30 Aug 2006 11:09:00 +0200
pymol (0.98+0.99rc6-1ubuntu1) edgy; urgency=low
* Re-merge with Debian
-- Barry deFreese <bddebian@comcast.net> Sun, 23 Jul 2006 17:39:15 -0400
pymol (0.98+0.99rc6-1) unstable; urgency=low
* New upstream release candidate. * debian/patches/02_test-suite.dpatch: Resync. * debian/patches/03_povray.dpatch: Likewise. * debian/patches/05_examples_data_path.dpatch: Likewise. * debian/patches/09_chempy_data_path.dpatch: Likewise. * debian/control (Build-Depends): Added libfreetype6-dev.
-- Michael Banck <mbanck@debian.org> Fri, 30 Jun 2006 02:05:00 +0200
pymol (0.98-1ubuntu2) dapper; urgency=low
* Merged existing desktop files and updated to current freedestkop
standards. Closes Ubuntu #36435
-- Zygmunt Krynicki <zkrynicki@gmail.com> Sat, 25 Mar 2006 01:22:38 +0100
2005
pymol (0.98-1ubuntu1) breezy; urgency=low
* Resynchronise with Debian. * Sponsored for Barry DeFreese (Closes: Ubuntu #12487)
-- Stephan Hermann <sh@sourcecode.de> Sun, 24 Jul 2005 11:43:59 +0200
pymol (0.98-1ubuntu2) dapper; urgency=low
* Merged existing desktop files and updated to current freedestkop
standards. Closes Ubuntu #36435
-- Zygmunt Krynicki <zkrynicki@gmail.com> Sat, 25 Mar 2006 01:22:38 +0100
pymol (0.98-1ubuntu1) breezy; urgency=low
* Resynchronise with Debian. * Sponsored for Barry DeFreese (Closes: Ubuntu #12487)
-- Stephan Hermann <sh@sourcecode.de> Sun, 24 Jul 2005 11:43:59 +0200
pymol (0.98-1) unstable; urgency=low
* The 'Fixing Ubunt^W^WPreparing for Python Transition' Release.
* New upstream release.
* debian/patches/03_povray.dpatch: Updated.
* debian/rules (install): Create application-registry directory.
* debian/patches/02_test-suite.dpatch (pymol-test): Do not
hardcode python version.
* debian/pymol.launch: Renamed to ...
* debian/pymol.launch.in: ... this, and generalize occurances of
python versions to @PYTHON_VERSION@.
* debian/rules (debian/pymol.launch): New rule, processing
debian/pymol.launch.in.
* debian/rules (build-stamp): Depend on debian/pymol.launch.
-- Michael Banck <mbanck@debian.org> Sun, 3 Jul 2005 12:56:15 +0200
pymol (0.97-3) unstable; urgency=low
* debian/control (Depends): Use ${python:Depends} instead of
exlicitely specifying the current default python version.
* (Build-Depends): Use python-dev and python-numeric rather than
specific versions.
* debian/pymol.dirs: Removed.
* debian/rules (install): Grouped creation of directories together
and create missing directories under $(BUILD_DIR)/usr/share as
well as $(BUILD_DIR)/usr/bin.
-- Michael Banck <mbanck@debian.org> Tue, 5 Apr 2005 13:14:24 +0200
pymol (0.97-2) unstable; urgency=low
* debian/patches/09_chempy_data_path.dpatch: Include relevant chempy
changes from the old 01_data_path.dpatch and adopt it slightly to
use CHEMPY_PATH. Reported by Christoph Scheurer.
* debian/pymol.launch: Use $CHEMPY_PATH instead of $CHEMPY_DATA_PATH.
-- Michael Banck <mbanck@debian.org> Sat, 8 Jan 2005 15:50:45 +0100
2004
pymol (0.97-1) unstable; urgency=low
* New upstream release. * debian/patches/10_png_includes: Dropped, included upstream. * debian/patches/00list (10_png_includes.dpatch): Removed. * debian/control (Build-Depends): Added python; closes: #261040. * debian/pymol.launch (PYMOL_PATH): New environment variable to work around upstream breakage for the time being.
-- Michael Banck <mbanck@debian.org> Fri, 6 Aug 2004 03:02:32 +0200
pymol (0.95-1) unstable; urgency=low
* New upstream release.
* (layer0/MyPNG.c): Reorder #includes in MyPNG.c.
(10_png_includes.dpatch)
* debian/patches/00list (10_png_includes.dpatch): Added.
* debian/control (Build-Depends): Drop gcc-2.95 again, #229080 does
not show up anymore with th current gcc.
* debian/rules (CC): Removed.
-- Michael Banck <mbanck@debian.org> Wed, 7 Apr 2004 21:34:02 +0200
pymol (0.93-5) unstable; urgency=low
* debian/control (Build-Depends): Really only depend on gcc-2.95 on
ia64 and hppa; closes: #235709.
* debian/rules (PYMOL_PATH): New variable, to make sure the test-
suite is able to find its data files.
-- Michael Banck <mbanck@debian.org> Tue, 2 Mar 2004 15:20:32 +0100
pymol (0.93-4) unstable; urgency=low
* debian/rules: Only set CC=2.95 if not building for ia64 or hppa.
* debian/control: Do not Build-Depend on gcc-2.95 on ia64 and hppa;
closes: #235658.
-- Michael Banck <mbanck@debian.org> Mon, 1 Mar 2004 23:04:21 +0100
pymol (0.93-3) unstable; urgency=low
* debian/control (Build-Depends): Revert to gcc-2.95 to evade segmen-
tation faults when rendering lines with binaries built with gcc-3.x.
* debian/rules: Export CC=gcc-2.95; closes: #229080.
-- Michael Banck <mbanck@debian.org> Sun, 22 Feb 2004 11:12:13 +0100
pymol (0.93-2) unstable; urgency=low
* Fix environment-variable handling in modules/pymol/wizards/
mutagenesis.py; closes: #225590.
(09_chempy_data_path.dpatch)
* 05_examples_data_path.dpatch: Updated to find 1hpv.pdb for the
'Scripted Animation' demo.
-- Michael Banck <mbanck@debian.org> Sat, 3 Jan 2004 23:08:13 +0100
2003
pymol (0.93-1) unstable; urgency=low
* New upstream release.
* debian/patches/00list (01_data_path.dpatch): Dropped, fixed
upstream.
(07_setup.py._opengl-libs.dpatch): Likewise.
(08_setup.py_missing_file.dpatch): Likewise.
* debian/pymol.launch: Changed $PYMOL_DATA_PATH to $PYMOL_DATA, in
order to follow upstream.
-- Michael Banck <mbanck@debian.org> Sun, 2 Nov 2003 12:06:10 +0100
pymol (0.90-2) unstable; urgency=low
* 01_data_path.dpatch:
- Factor out examples/-directory into 05_examples_data_path.dpatch.
- Factor out patch for modules/chempy/cex.py into
06_remove_shebang.dpatch.
* debian/pymol.launch: Pass command-line arguments to pymol through
the wrapper script, thanks to Gabor Tusnady for reporting this.
* setup.py (pyogl_libs): Added "GL","GLU","glut" and "png";
closes: #214026. (07_setup.py._opengl-libs.dpatch)
* (setup Extension): Added layer0/MemoryCache.c.
(08_setup.py_missing_file.dpatch)
-- Michael Banck <mbanck@debian.org> Sat, 4 Oct 2003 21:54:58 +0200
pymol (0.90-1) unstable; urgency=low
* 02_test-suite.dpatch: Updated for python2.3, thanks to Matt Kraai;
closes: #207706, #207711
* 04_Rules.make.dpatch: Activated
* debian/rules: Remove Rules.make linking/removing, handled by
dpatch now
-- Michael Banck <mbanck@debian.org> Mon, 1 Sep 2003 19:16:02 +0200
pymol (0.90-0.1) unstable; urgency=low
* NMU * New upstream release. * Update for python2.3 (closes: #206302).
-- Matthias Klose <doko@debian.org> Thu, 28 Aug 2003 21:04:16 +0200
pymol (0.88-1) unstable; urgency=low
* New upstream release; closes: #196159 * debian/pymol.menu: Moved menu entry from Math to Science section * modules/pymol/povray.py: Fixed command-line again * debian/control, debian/rules: Switch to dpatch
-- Michael Banck <mbanck@debian.org> Mon, 16 Jun 2003 18:16:41 +0200
pymol (0.86-3) unstable; urgency=low
* renamed said hacked pymol script to test/pymol-test
* debian/rules: make test/pymol-test executable
* modules/chempy/cex.py: Removed !# from top, this is no script
as far as pymol is concerned
-- Michael Banck <mbanck@debian.org> Mon, 13 Jan 2003 17:36:24 +0100
pymol (0.86-2) unstable; urgency=low
* test/run: Fixed test-suite to import the pymol modules under
debian/pymol by providing a hacked pymol script in test/
-- Michael Banck <mbanck@debian.org> Mon, 13 Jan 2003 14:36:48 +0100
pymol (0.86-1) unstable; urgency=low
* New upstream release; closes: #175881 - Patch for pmw got applied upstream; closes: #160584 - Hacked around $PYMOL_PATH once more in various places - Followed Upstream's layout of the data a bit by using /usr/share/pymol and /usr/share/chempy along with their subdirectories respectively * test/run: display the diff in case the test failed * debian/rules: Use setup.py in build: and clean: target now * debian/control: Build with libpng12-0-dev now
-- Michael Banck <mbanck@debian.org> Mon, 13 Jan 2003 01:16:35 +0100
2002
pymol (0.82-2) unstable; urgency=low
* Switched to python-2.2; closes: #158931 * modules/pymol/povray.py: Changed PovRay-command from x-povray to povray; closes: #151190 * debian/control: Bumped Standards-Version to 3.5.6.1
-- Michael Banck <mbanck@debian.org> Mon, 16 Sep 2002 01:11:57 +0200
pymol (0.82-1) unstable; urgency=low
* New upstream release
* Included pymol.xpm icon for menu-system,
fixing the menu entry; closes: #148400
* debian/control: Removed the Suggestion of pymol-doc for now as
the manual is out of date, documented its website in README.Debian
instead. Still no manpage, sorry
* Included splash.png in /usr/share/pymol and changed
modules/pymol/invocation.py accordingly
* debian/rules: Triggered the test-run
* modules/pmg_tk/Demo.py: Changed all cmd.load to look for the
.pdb-files in /usr/share/pymol/demo and installed those files
there; closes: #148153, #150070
* debian/control: Trimmed Build-Depends:
-- Michael Banck <mbanck@debian.org> Fri, 21 Jun 2002 00:45:18 +0200
pymol (0.80-3) unstable; urgency=low
* Actually compile shared libraries with -fPIC this time
-- Michael Banck <mbanck@debian.org> Sat, 25 May 2002 13:08:19 +0200
pymol (0.80-2) unstable; urgency=low
* Suggests: pymol-doc now * Build shared libraries with -fPIC; closes: #148118
-- Michael Banck <mbanck@debian.org> Sat, 25 May 2002 09:35:51 +0200
pymol (0.80-1) unstable; urgency=low
* Initial Release; closes: #146024 * Moved data files to /usr/share/pymol * Removed need for environment variables during execution, hardcoding the paths for the moment * Added a link to undocumented.1 for pymol.1 for the moment
-- Michael Banck <mbanck@debian.org> Sun, 19 May 2002 15:56:00 +0200