2009
exonerate (2.2.0-2) unstable; urgency=low
[ Charles Plessy ]
* debian/control:
- Enhances bioperl-run instead of bioperl.
- Incremented Standards-Version to reflect conformance with Policy
3.8.3 (no changes needed).
[ Andreas Tille ]
* debian/control
- s/libreadline5-dev/libreadline-dev/
- s/Debian-Med/Debian Med/
-- Andreas Tille <tille@debian.org> Sun, 13 Sep 2009 17:34:07 +0200
2008
exonerate (2.2.0-1) unstable; urgency=low
* New upstream release (LP: #285237).
This version includes fixes for problems with excessive memory consumption
when compiled against glib-2, and fixes a bug with using exonerate-server
with unmasked sequences.
-- Charles Plessy <plessy@debian.org> Mon, 20 Oct 2008 14:18:36 +0200
exonerate (2.1.0-1) unstable; urgency=low
* New upstream release (LP: #254115).
- This version includes many optimisations and bug fixes for the
exonerate-server. It is now possible to search a whole human-sized
genome with a typical cDNA or protein query in under a second.
- Exonerate-server uses use pthreads by default.
* debian/control, debian/compat: switched to debhelper 7.
* debian/control:
- Checked conformance with Policy 3.8.0.
- Enhances: bioperl.
* debian/rules:
- `--enable-glib2' removed as now default.
- Activated tests after build.
* Updated debian/copyright.
-- Charles Plessy <plessy@debian.org> Mon, 04 Aug 2008 19:13:05 +0900
exonerate (2.0.0-1) unstable; urgency=low
[ David Paleino ] * Updated to Standards-Version 3.8.0 (no changes needed) [ Charles Plessy ] * New upstream release (Closes: #479323) Quoting the upstream changelog: o Modified exonerate to work in Client:Server mode o Fixed --refine to work with SDP alignments o Disabled codegen warnings from bootstrapper during compilation o Added --geneticcode option for using alternative genetic codes o Added --splice5 and --splice3 to allow alternative splice site PSSMs o Fixed several bugs when scanning query sequences (eg. --forcescan query) o Fixed to report query on forward strand whenever possible. o Fixed --ryo sequence dumping with --bestn o Fixed a bug with missing seeds when using --annotation o Changed license to GPLv3 o Added protein2dna:bestfit and protein2genome:bestfit models (works with exhaustive alignment only) * Updated my email address. * debian/control: - Building on glib-2.0 instead of 1.2. - Added a build dependency on libreadline5-dev. - Augmented the long description and changed the short. - Added a build dependency on CDBS. * debian/copyright made machine-readable. * debian/rules switched to cdbs. * debian/dirs: removed.
-- Charles Plessy <plessy@debian.org> Wed, 02 Jul 2008 11:24:48 +0900
2007
exonerate (1.4.0-1) unstable; urgency=low
* Initial release (Closes: #431404).
-- Steffen Moeller <moeller@debian.org> Mon, 02 Jul 2007 11:42:38 +0200