libvcflib (1.0.9+dfsg1-3) unstable; urgency=medium * add support for loong64 arch Closes: #1057253 -- Andreas Tille Sun, 03 Dec 2023 13:29:41 +0100 libvcflib (1.0.9+dfsg1-2) unstable; urgency=medium * Source-only upload. -- Andreas Tille Sun, 06 Aug 2023 23:01:54 +0200 libvcflib (1.0.9+dfsg1-1) unstable; urgency=medium * Bump SOVERSION due to ABI change Closes: #1032557 * Attempt to use d-shlibs delayed for later once shared and static lib are created both * Drop unneeded header files with questionable licenses -- Andreas Tille Sun, 23 Jul 2023 10:42:25 +0200 libvcflib (1.0.9+dfsg-1) unstable; urgency=medium [ Étienne Mollier ] * New upstream version 1.0.9+dfsg * d/patches: refresh everything. * wfa2_linking: add patch; fix linker errors. [ Andreas Tille ] * libvcflib-dev: Depends: libwfa2-dev Closes: #1031473 -- Andreas Tille Sun, 19 Feb 2023 13:54:18 +0100 libvcflib (1.0.7+dfsg-2) unstable; urgency=medium * Restrict architectures to 64bit only -- Andreas Tille Tue, 07 Feb 2023 21:10:50 +0100 libvcflib (1.0.7+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version * Standards-Version: 4.6.2 (routine-update) * Do not support ZIG compiler which is not packaged yet * Build-Depends: python3-pybind11, libtabixpp-dev * Fix name of upstream download tarball in watch file * Versioned Build-Depends: libwfa2-dev (>= 2.3.2) * Do not exclude Files that are not in upstream tarball any more * New upstream version 1.0.6+dfsg [ Nilesh Patra ] * d/rules: Set WFA_GITMODULE to OFF * Refresh/update patches * Add some ext modules that are missed out in the tarball * Add rules for getting ext libs to contrib and adding clean rules for pruning them off for consecutive clean builds * Add build depends on libhts-dev and python3-dev * Pass more flags to get past the configure step * d/rules: Get tests running, do not install py shared object lib -- Andreas Tille Tue, 07 Feb 2023 18:37:40 +0100 libvcflib (1.0.3+dfsg-2) unstable; urgency=medium * Fix watch file * Standards-Version: 4.6.1 (routine-update) -- Andreas Tille Fri, 07 Oct 2022 16:26:06 +0200 libvcflib (1.0.3+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version [ Sascha Steinbiss ] * Team upload. * Fix manpage paths. -- Sascha Steinbiss Sun, 20 Feb 2022 19:24:58 +0100 libvcflib (1.0.2+dfsg-5) unstable; urgency=medium [ Vagrant Cascadian ] * Enable reproducible by avoid to embed the full path in RPATH Closes: #1003808 [ Andreas Tille ] * Add missing build dependency on dh addon. -- Andreas Tille Mon, 17 Jan 2022 20:53:03 +0100 libvcflib (1.0.2+dfsg-4) unstable; urgency=medium * Install scripts Closes: #989014 -- Andreas Tille Fri, 24 Dec 2021 10:51:57 +0100 libvcflib (1.0.2+dfsg-3) unstable; urgency=medium * Fix build with gcc-11 Closes: #984139 * Standards-Version: 4.6.0 (routine-update) -- Andreas Tille Wed, 20 Oct 2021 18:33:54 +0200 libvcflib (1.0.2+dfsg-2) unstable; urgency=medium * Team upload. * debian/rules: unit tests: Use DEB_HOST_GNU_TYPE instead of DEB_HOST_MULTIARCH for finding the build directory -- Michael R. Crusoe Thu, 28 Jan 2021 13:03:40 +0100 libvcflib (1.0.2+dfsg-1) unstable; urgency=medium [ Steffen Moeller ] * Team upload. * Added binaries expected by bcbio to /usr/bin * d/rules - clean: Removing generated README.html [ Michael R. Crusoe ] * debian/copyright: Update Files-Excluded * Standards-Version: 4.5.1 (routine-update) * New upstream release * Switch to cmake, update patches -- Michael R. Crusoe Thu, 28 Jan 2021 11:16:19 +0100 libvcflib (1.0.1+dfsg-4) unstable; urgency=medium * Team upload. * debian/patches/use_debian_packaged_smithwaterman.patch: adjust inclusion of the packaged /usr/include/smithwaterman/SmithWatermanGotoh.h * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Update patch headers. * IntervalTree.h patch is no longer needed -- Michael R. Crusoe Sat, 31 Oct 2020 21:57:30 +0100 libvcflib (1.0.1+dfsg-3) unstable; urgency=medium * Team upload. * Improve the usage of these packages during cross-building -- Michael R. Crusoe Wed, 12 Feb 2020 13:00:17 +0100 libvcflib (1.0.1+dfsg-2) unstable; urgency=medium * Team upload. * -tools: add ${perl:Depends} * libvcflib{1,-dev}: add Multi-Arch: same * Standards-Version: 4.4.1 -- Michael R. Crusoe Thu, 26 Dec 2019 15:54:27 +0100 libvcflib (1.0.1+dfsg-1) unstable; urgency=medium * New upstream release * Updated homepage URL * Major rewrite of patches -- Michael R. Crusoe Wed, 11 Dec 2019 13:11:23 +0100 libvcflib (1.0.0+dfsg-2) unstable; urgency=medium * Use 2to3 to port to Python3 Closes: #936930 * Use markdown instead of python-markdown -- Andreas Tille Fri, 06 Sep 2019 09:05:48 +0200 libvcflib (1.0.0+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version; patches refreshed * libvcflib-tools: promote vcffilter to /usr/bin; add basic autopkgtests * hardening fixed * update libvcflib.pc to reference upstream libraries * fixed spelling typos * updated debian/include/IntervalTree.h from https://github.com/ekg/intervaltree/blob/master/IntervalTree.h -- Michael R. Crusoe Wed, 04 Sep 2019 13:00:09 +0900 libvcflib (1.0.0~rc2+dfsg-4) unstable; urgency=medium * Move manpage to vcflib-tools package Closes: #933649 -- Andreas Tille Thu, 01 Aug 2019 14:39:28 +0200 libvcflib (1.0.0~rc2+dfsg-3) unstable; urgency=medium * Move vcf2tsv and vcfkeepinfo to /usr/bin since it is needed by freebayes test * debhelper-compat 12 * Standards-Version: 4.4.0 * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove trailing whitespace in debian/control * Override dh_dwz to do nothing -- Andreas Tille Wed, 31 Jul 2019 16:12:42 +0200 libvcflib (1.0.0~rc2+dfsg-2) unstable; urgency=medium * Add libfastahack to pkg-config input file * Depends: libfastahack-dev -- Andreas Tille Fri, 14 Sep 2018 13:56:52 +0200 libvcflib (1.0.0~rc2+dfsg-1) unstable; urgency=medium [ Steffen Moeller ] * Created debian/upstream/metadata for references to registries. [ Andreas Tille ] * New upstream version * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Versioned Build-Depends: libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~) * Fix header file name * Build-Depends: libbz2-dev * Fix installation target dir * Fix interpreter lines and add missing interpreter dependencies -- Andreas Tille Thu, 13 Sep 2018 22:34:23 +0200 libvcflib (1.0.0~rc1+dfsg1-6) unstable; urgency=medium * Test suite of freebayes 1.1.0 needs vcfuniq and vcfstreamsort in PATH so add according links * Standards-Version: 4.1.0 -- Andreas Tille Mon, 04 Sep 2017 16:05:56 +0200 libvcflib (1.0.0~rc1+dfsg1-5) unstable; urgency=medium * Fix watch file -- Andreas Tille Sat, 17 Jun 2017 23:45:29 +0200 libvcflib (1.0.0~rc1+dfsg1-4) experimental; urgency=medium * Re-add pkg-config file for easier usage in freebayes which was reverted to meet freeze policy -- Andreas Tille Fri, 17 Mar 2017 13:29:20 +0100 libvcflib (1.0.0~rc1+dfsg1-3) unstable; urgency=medium * Fix location of binary tools Closes: #856424 * Remove empty debian/upstream/metadata boilerplate -- Andreas Tille Wed, 01 Mar 2017 15:43:05 +0100 libvcflib (1.0.0~rc1+dfsg1-2) experimental; urgency=medium * Add pkg-config file for easier usage in freebayes -- Andreas Tille Fri, 10 Feb 2017 09:09:35 +0100 libvcflib (1.0.0~rc1+dfsg1-1) unstable; urgency=medium * Adapt to recent PIE changes in dpkg (Thanks for the patch to Adrian Bunk ) Closes: #844890 * d/watch: version=4 * debhelper 10 * Remove code copy of libssw Closes: #838513 * Add lintian overrides for false positive -- Andreas Tille Tue, 22 Nov 2016 13:13:12 +0100 libvcflib (1.0.0~rc1+dfsg-1) unstable; urgency=low * Initial release (Closes: #838020) -- Andreas Tille Fri, 16 Sep 2016 15:52:29 +0200