libbpp-seq (2.4.1-12) unstable; urgency=medium * Team upload. * Silence another lintian warning * d/patches/spelling: forward upstream * d/patches/unforce-cxxflags.patch: improve and forward upstream. -- Michael R. Crusoe Mon, 25 Mar 2024 19:38:05 +0100 libbpp-seq (2.4.1-11) unstable; urgency=medium [ Dann Frazier ] * Drop hard-coded dependency on libbpp-core4 Closes: #1067586 [ Andreas Tille ] * Lintian-overrides for version-substvar-for-external-package -- Andreas Tille Mon, 25 Mar 2024 11:30:15 +0100 libbpp-seq (2.4.1-10.1) unstable; urgency=medium * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. Closes: #1062240 -- Lukas Märdian Thu, 29 Feb 2024 10:13:25 +0000 libbpp-seq (2.4.1-10) unstable; urgency=medium * Team upload. * Standards-Version: 4.6.2 (routine-update) * Update symbols for gcc-13. Closes: #1037721, #1042204 * d/patches/spelling: fix a typo * d/control: Use ${devlibs:Depends} for the -dev package. -- Michael R. Crusoe Sun, 13 Aug 2023 13:21:18 +0200 libbpp-seq (2.4.1-9) unstable; urgency=medium * Fix watch file -- Andreas Tille Mon, 28 Nov 2022 18:00:15 +0100 libbpp-seq (2.4.1-8) unstable; urgency=medium * Adapt symbols to gcc-12 Closes: #1012971 * Standards-Version: 4.6.1 (routine-update) -- Andreas Tille Sun, 24 Jul 2022 16:06:08 +0200 libbpp-seq (2.4.1-7) unstable; urgency=medium * Really fix symbols file -- Andreas Tille Fri, 22 Oct 2021 07:26:58 +0200 libbpp-seq (2.4.1-6) unstable; urgency=medium * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) * Fix ftbfs with gcc-11 Closes: #984094 -- Andreas Tille Mon, 11 Oct 2021 10:35:48 +0200 libbpp-seq (2.4.1-5) unstable; urgency=medium * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Refer to specific version of license GPL-2+. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Update symbols for gcc-10 Closes: #957428 -- Andreas Tille Thu, 23 Jul 2020 11:33:45 +0200 libbpp-seq (2.4.1-4) unstable; urgency=medium * Rebuild for new version of gcc to fix symbols Closes: #925736 * debhelper-compat 12 * Standards-Version: 4.4.0 * Set upstream metadata fields: Contact, Name. -- Andreas Tille Tue, 20 Aug 2019 16:07:58 +0200 libbpp-seq (2.4.1-3) unstable; urgency=medium * Rebuild for new version of gcc to fix symbols Closes: #923954 * Standards-Version: 4.3.0 -- Andreas Tille Thu, 07 Mar 2019 18:56:16 +0100 libbpp-seq (2.4.1-2) unstable; urgency=medium [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. [ Andreas Tille ] * Fix symbols file Closes: #915342 * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/copyright -- Andreas Tille Mon, 03 Dec 2018 08:15:45 +0100 libbpp-seq (2.4.1-1) unstable; urgency=medium [ Julien Dutheil ] * New upstream version Closes: #897784 [ Andreas Tille ] * Standards-Version: 4.2.0 -- Julien Dutheil Sun, 19 Aug 2018 11:45:47 +0200 libbpp-seq (2.4.0-2) unstable; urgency=medium [ Julien Dutheil ] * Provide symbols file only for amd64 [ Andreas Tille ] * Provide full license text of CeCILL license -- Julien Dutheil Sun, 08 Apr 2018 08:04:59 +0200 libbpp-seq (2.4.0-1) unstable; urgency=medium [ Julien Dutheil ] * New upstream version [ Andreas Tille ] * Add symbols file -- Andreas Tille Sun, 25 Mar 2018 14:14:44 +0100 libbpp-seq (2.3.2-1) unstable; urgency=medium [ Julien Dutheil ] * New upstream version [ Andreas Tille ] * Standards-Version: 4.1.3 * cme fix dpkg-control * debhelper 11 -- Julien Dutheil Mon, 05 Feb 2018 17:36:38 +0200 libbpp-seq (2.3.1-8) unstable; urgency=medium * Rebuild with gcc-7 * Standards-Version: 4.0.1 -- Andreas Tille Wed, 23 Aug 2017 19:38:40 +0200 libbpp-seq (2.3.1-7) unstable; urgency=medium [ Julien Dutheil ] * Make tests work on 32 bits archs (enabled position independent code). * Do not override debian default CXX flags. -- Julien Dutheil Wed, 09 Aug 2017 15:54:52 +0200 libbpp-seq (2.3.1-6) unstable; urgency=medium * Increased timeout threshold for Bowker test to pass on all arch. * Removed postins scripts. -- Julien Dutheil Mon, 17 Jul 2017 22:29:29 +0200 libbpp-seq (2.3.1-5) unstable; urgency=medium [ Julien Dutheil ] * Removed unused class VectorProbabilisticSiteContainer [ Andreas Tille ] * debhelper 10 -- Julien Dutheil Thu, 13 Jul 2017 08:52:31 +0200 libbpp-seq (2.3.1-4) unstable; urgency=medium * do not install broken header (Thanks for the patch to Steve Langasek ) Closes: #866069 * d-shlibs (>= 0.80) contains needed override -- Andreas Tille Tue, 27 Jun 2017 08:35:18 +0200 libbpp-seq (2.3.1-3) unstable; urgency=medium * cmake files belong to /usr/lib/$(DEB_HOST_MULTIARCH) Closes: #865529 * hardening=+all * do not ignore test failures * Standards-Version: 4.0.0 (no changes needed) -- Andreas Tille Thu, 22 Jun 2017 21:52:59 +0200 libbpp-seq (2.3.1-2) unstable; urgency=medium * Make sure cmake files will be installed also on i386 -- Andreas Tille Thu, 22 Jun 2017 07:58:04 +0200 libbpp-seq (2.3.1-1) unstable; urgency=medium * New upstream version * d/watch: point to github -- Andreas Tille Tue, 13 Jun 2017 13:35:29 +0200 libbpp-seq (2.2.0-1) unstable; urgency=medium * New upstream version * Packaging moved to Git * Better description * Team maintenance in Debian Med team * Add watch file * debhelper 9 * DEP5 * short dh rules file using d-shlibs * Library transition Closes: #791099 -- Andreas Tille Wed, 13 Apr 2016 15:17:21 +0200 libbpp-seq (2.1.0-1) unstable; urgency=low * 'omics' tools now in bpp-seq-omics * Extended BppO support * StateProperties renamed to AlphabetIndex -- Julien Dutheil Tue, 05 Mar 2013 14:31:00 +0100 libbpp-seq (2.0.3-1) unstable; urgency=low * Bugs fixed in maf parser + new iterators * Added support for GFF * Added support for FastQ * Several bugs fixed -- Julien Dutheil Thu, 09 Feb 2012 14:00:00 +0100 libbpp-seq (2.0.2-1) unstable; urgency=low * RFP: Bio++ -- The Bio++ bioinformatics libraries. (Closes: #616373). * Packages are now non-native. * Bugs fixed in maf parser. -- Julien Dutheil Thu, 09 Jun 2011 11:00:00 +0100 libbpp-seq (2.0.1) unstable; urgency=low * Fixed copyright and rules file. -- Julien Dutheil Mon, 28 Feb 2011 09:00:00 +0100 libbpp-seq (2.0.0) unstable; urgency=low * New source files organization. * More NGS tools: sequence annotations, quality scores, file parsers, etc. -- Julien Dutheil Mon, 07 Feb 2011 09:00:00 +0100 libbpp-seq (1.7.0) unstable; urgency=low * Several bug fixed. Compilation with -Weffc++. * New compressed sites container. * Improved security by changing several pointers to references. -- Julien Dutheil Thu, 25 Mar 2010 10:02:50 +0100 libbpp-seq (1.6.0) unstable; urgency=low * New support for Nexus sequence files. * Update for version 1.8 of Bio++. -- Julien Dutheil Wed, 10 Jun 2009 11:28:58 +0100 libbpp-seq (1.5.0) unstable; urgency=low * Several bugs fixed, new Phred sequence format, speed improvements. -- Julien Dutheil Thu, 11 Dec 2008 12:21:37 +0100 libbpp-seq (1.4.1) unstable; urgency=low * Initial Release. -- Julien Dutheil Mon, 21 Jul 2008 15:17:26 +0200