hhsuite (3.3.0+ds-8) unstable; urgency=medium * Team upload. * gcc-13.patch: new: fix ftbfs with gcc 13. (Closes: #1037689) * d/control: declare compliance to standards version 4.6.2. -- Étienne Mollier Sun, 13 Aug 2023 10:47:11 +0200 hhsuite (3.3.0+ds-7) unstable; urgency=medium * Fix watchfile. * Bump Standards-Version. * Update date in d/copyright. -- Sascha Steinbiss Tue, 25 Oct 2022 15:17:24 +0200 hhsuite (3.3.0+ds-6) unstable; urgency=medium * Adjust patch to not overwrite example files in tests. This caused a modified file containing the build time to be packaged, leaving the package unreproducible (and is likely not intended here) -- Sascha Steinbiss Mon, 22 Nov 2021 22:27:31 +0100 hhsuite (3.3.0+ds-5) unstable; urgency=medium * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- update) * Remove trailing whitespace in debian/copyright (routine-update) -- Andreas Tille Wed, 13 Oct 2021 14:36:58 +0200 hhsuite (3.3.0+ds-4) unstable; urgency=medium * Team upload. * Fix tests on non-x86. * Include Built-Using: ${simde:Built-Using} to satisfy GPL requirements -- Michael R. Crusoe Wed, 02 Sep 2020 15:39:19 +0200 hhsuite (3.3.0+ds-3) unstable; urgency=medium * Team upload. * Drop unused add_Makefile_in_data.patch * Apply patch from upstream to enable full testing without MPI * Ship the ffindex binaries from the hhsuite fork and Conflict with the ffindex package. * Replace disable-AVX-SSE.patch with NATIVE_ARCH=0 * Build-depend on libsimde-dev 0.6.0-2 to get i386 related patches -- Michael R. Crusoe Wed, 02 Sep 2020 13:18:00 +0200 hhsuite (3.3.0+ds-2) unstable; urgency=medium * Team upload. * Fix non-x86 builds -- Michael R. Crusoe Tue, 01 Sep 2020 11:37:48 +0200 hhsuite (3.3.0+ds-1) unstable; urgency=medium * New upstream version * debhelper-compat 13 (routine-update) * Refresh patches * Include the a3m_* utilities * Exclude lib/simde and use libsimde-dev instead * Add missing GPL-2 text to debian/copyright * On i386 & amd64: build one binary for each SIMD level; add dispatching script * Upstream has hard forked ffindex, so use their copy * Removed two old, unused patches -- Michael R. Crusoe Mon, 31 Aug 2020 15:18:43 +0200 hhsuite (3.2.0-3) unstable; urgency=medium [ Steffen Möller ] * Added ref to conda [ Frédéric Bonnard ] * Enable ppc64el [ Andreas Tille ] * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). -- Andreas Tille Tue, 17 Mar 2020 09:50:48 +0100 hhsuite (3.2.0-2) unstable; urgency=medium [ Santiago Vila ] * Fix FTBFS when built with dpkg-buildpackage -A Closes: #932912 [ Andreas Tille ] * debhelper-compat 12 * Standards-Version: 4.4.0 * Fix autopkgtest -- Andreas Tille Thu, 25 Jul 2019 03:06:04 +0200 hhsuite (3.2.0-1) unstable; urgency=medium [ Michael R. Crusoe ] * Team upload. * New upstream release. "Added hhsearch_omp, hhsearch_mpi, hhalign_omp and haling_mpi binaries Removed non-GPLv3 compatible code ffindex_apply_mpi will not crash anymore on systems with low amount of virtual memory" * The non-GPLv3 code was in src/hhprefilter.cpp; now gone * Mark hhsuite-data as Multi-Arch: foreign * Drop hhsuite-doc: documentation moved by upstream to https://github.com/soedinglab/hh-suite/wiki * Removed '-march=native' [ Andrius Merkys ] * Revoking executable permission from Perl modules. -- Michael R. Crusoe Tue, 23 Jul 2019 12:06:51 +0200 hhsuite (3.0~beta3+dfsg-3) unstable; urgency=high * Team upload [ Andreas Tille ] * Build against ffindex (>= 0.9.9.8) [ Michael R. Crusoe ] * Don't build with -march=native -- Michael R. Crusoe Fri, 15 Feb 2019 10:06:44 -0800 hhsuite (3.0~beta3+dfsg-2) unstable; urgency=medium * Install context_data.crf (Thanks for the patch to Andrius Merkys ) Closes: #918765 * Add autopkgtest reproducing the issue of bug #918765 * debhelper 11 * Standards-Version: 4.3.0 * Secure URI in copyright format * Remove trailing whitespace in debian/copyright * Do not parse d/changelog * Add versioned (Build-)Depends: ffindex (>= 0.9.9.7.soedinglab+git20171201.74550c8) * Adapt doc-base file to debhelper 11 location -- Andreas Tille Wed, 09 Jan 2019 17:36:27 +0100 hhsuite (3.0~beta3+dfsg-1) unstable; urgency=medium [ Steffen Moeller ] * New upstream version. * debian/upstream/metadata: - yamllint cleanliness - Added references to registries * d/control - compliance with policy 4.2 - adapted Vcs URLs to salsa.d.o * Caveat: Does not compile with openmpi libraries discovered. See README.source. [ Andreas Tille ] * Fix Vcs-Browser * Do not parse d/changelog to obtain version -- Andreas Tille Tue, 21 Aug 2018 21:09:09 +0200 hhsuite (3.0~beta2+dfsg-3) unstable; urgency=medium * Specify correct format in printf statement (Thanks for the patch to Daniel Shahaf ) Closes: #851764 -- Andreas Tille Wed, 18 Jan 2017 16:52:21 +0100 hhsuite (3.0~beta2+dfsg-2) unstable; urgency=medium * Really fix watch file to fetch latest version * debhelper 10 * simplify d/rules to make it more readable * drop -dbg file -- Andreas Tille Wed, 18 Jan 2017 12:06:40 +0100 hhsuite (3.0~beta2+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * Fixed watch file [ Sascha Steinbiss ] * New upstream release. Closes: #846487 * Massive rework of packaging due to new upstream code and build system. * Migrate to git. -- Sascha Steinbiss Sat, 14 Jan 2017 15:23:25 +0000 hhsuite (2.0.16-7) unstable; urgency=medium * Use system defined log2 and log10 to enable build using gcc-6.1 Closes: #831115 * cme fix dpkg-control * fix spelling * hardening=+all -- Andreas Tille Sat, 13 Aug 2016 07:49:16 +0200 hhsuite (2.0.16-6) unstable; urgency=medium * Versioned Build-Depends ffindex0-dev (>= 0.9.9.6-2) Closes: #802076 -- Andreas Tille Sun, 18 Oct 2015 07:53:08 +0200 hhsuite (2.0.16-5) unstable; urgency=medium * Add Replaces: hhsuite which was missing as well -- Andreas Tille Fri, 07 Nov 2014 07:08:34 +0100 hhsuite (2.0.16-4) unstable; urgency=medium * Add missing Breaks statement for hhsuite-doc Closes: #768114 -- Andreas Tille Wed, 05 Nov 2014 07:21:05 +0100 hhsuite (2.0.16-3) unstable; urgency=medium * hhsuite Breaks hhsuite-data (<= 2.0.16-1) Closes: #765066 * Priority: optional * Debhelper 9 * cme fix dpkg-control * DEP5 fix * *-doc and *-data package are Architecture: all -- Andreas Tille Mon, 13 Oct 2014 14:44:05 +0200 hhsuite (2.0.16-2) unstable; urgency=low [Steffen Moeller] * Bumped standard to 3.9.4. * Removed DMUA flag. * Created new -doc package and moved user guide to it * Moved scripts directory from hhsuite-data to hhsuite * Added CHANGES file to .docs * joined hardening patch with rest1 [Laszlo Kajan] * Bumped standard to 3.9.5. * Pulled 2.0.16-1 -> 2.0.16-1u1 changes from Ubuntu: arch all packages are now amd64, since all arch dep packages are also amd64. * Completed Steffen's changes. * Removed libpng12-dev dependency by disabling png feature. (Closes: #742579) -- Laszlo Kajan Mon, 08 Sep 2014 19:32:43 +0200 hhsuite (2.0.16-1) unstable; urgency=low [Laszlo Kajan] * New upstream release. * Updated debian/watch file. -- Laszlo Kajan Mon, 24 Sep 2012 09:32:14 +0200 hhsuite (2.0.15-1) unstable; urgency=low * New upstream release. -- Laszlo Kajan Wed, 27 Jun 2012 14:17:05 +0200 hhsuite (2.0.14-1) unstable; urgency=low * [Andreas Tille ] debian/upstream: Enhanced author values * [Laszlo Kajan ] New upstream release. -- Laszlo Kajan Wed, 23 May 2012 10:52:40 +0200 hhsuite (2.0.13-2) unstable; urgency=low * [Andreas Tille ] debian/upstream: - it is (now) possible to support more than one citation - more verbose citation information * [Laszlo Kajan to src/hhsearch.C in order to fix compilation issue with g++-4.7. (Closes: #667201) -- Laszlo Kajan Wed, 04 Apr 2012 13:45:49 +0200 hhsuite (2.0.13-1) unstable; urgency=low * New upstream release -- Laszlo Kajan Wed, 07 Mar 2012 09:35:48 +0100 hhsuite (2.0.12-1) unstable; urgency=low * Initial release (Closes: #656626) -- Laszlo Kajan Wed, 22 Feb 2012 10:03:00 +0100