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[ Source: pbsim  ]

Package: pbsim (1.0.3+git20180330.e014b1d+dfsg-2)

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simulator for PacBio sequencing reads

PacBio DNA sequencers produce two types of characteristic reads: CCS (short and low error rate) and CLR (long and high error rate), both of which could be useful for de novo assembly of genomes. PBSIM simulates those PacBio reads from a reference sequence by using either a model-based or sampling-based simulation. Simulated reads are useful, for example, when developing or evaluating sequence assemblers targeted at PacBio data.

Tags: Biology: Nucleic Acids, Field: Biology, field::biology:bioinformatics, implemented-in::c++, Role: Program, Purpose: use::simulating, works-with::biological-sequence

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Download for all available architectures
Architecture Package Size Installed Size Files
amd64 25.0 kB97.0 kB [list of files]
arm64 24.2 kB93.0 kB [list of files]
armel 24.6 kB92.0 kB [list of files]
armhf 24.1 kB84.0 kB [list of files]
i386 26.0 kB100.0 kB [list of files]
mips64el 25.5 kB99.0 kB [list of files]
mipsel 26.0 kB98.0 kB [list of files]
ppc64el 26.7 kB121.0 kB [list of files]
s390x 23.7 kB93.0 kB [list of files]