Package: tree-puzzle (5.2-5)

[ Source: tree-puzzle  ]

Reconstruction of phylogenetic trees by maximum likelihood

TREE-PUZZLE (the new name for PUZZLE) is an interactive console program that implements a fast tree search algorithm, quartet puzzling, that allows analysis of large data sets and automatically assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise maximum likelihood distances as well as branch lengths for user specified trees. Branch lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers a novel method, likelihood mapping, to investigate the support of a hypothesized internal branch without computing an overall tree and to visualize the phylogenetic content of a sequence alignment.

Tags: Field: Biology, Bioinformatics, Implemented in: C, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Supports Format: Plain Text

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• dep: libc0.1 (>= 2.3) [kfreebsd-amd64, kfreebsd-i386]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc0.1-udeb

• dep: libc6 (>= 2.3) [amd64, i386, mips, mipsel]

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.4) [armel, powerpc, s390]

  dep: libc6 (>= 2.6) [sparc]

• dep: libc6.1 (>= 2.3) [ia64]

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• dep: libsprng2

  The SPRNG Scalable Parallel RNG library -- library package

• rec: tree-puzzle-doc

  Reconstruction of phylogenetic trees by maximum likelihood

• sug: phylip

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• sug: treetool

  Package not available

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Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	142.5 kB	340.0 kB	[list of files]
armel	153.0 kB	368.0 kB	[list of files]
i386	126.1 kB	324.0 kB	[list of files]
ia64	212.0 kB	668.0 kB	[list of files]
kfreebsd-amd64	142.6 kB	322.0 kB	[list of files]
kfreebsd-i386	125.5 kB	306.0 kB	[list of files]
mips	163.2 kB	444.0 kB	[list of files]
mipsel	162.6 kB	444.0 kB	[list of files]
powerpc	151.3 kB	364.0 kB	[list of files]
s390	139.9 kB	336.0 kB	[list of files]
sparc	137.6 kB	340.0 kB	[list of files]