Package: clustalx (1.83-4) [non-free]

[ Source: clustalx  ]

GUI for Clustal W

This package offers a GUI interface for the Clustal W multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade.

The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment.

An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted.

Tags: Biology: Clustal/ALN, biology::format:fasta, Nucleic Acids, Proteins, Field: Biology, Bioinformatics, Implemented in: C, User Interface: X Window System, Role: Program, Scope: Utility, Interface Toolkit: Lesstif/Motif, Purpose: Analysing, Comparing, Data Visualization, Supports Format: Plain Text, X Window System: Application

Other Packages Related to clustalx

• dep: lesstif2

  OSF/Motif 2.1 implementation released under LGPL

• dep: libc6 (>= 2.7-1)

  Embedded GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libncbi6 (>= 6.1.20030421)

  NCBI libraries for biology applications

• dep: libvibrant6a (>= 6.1.20060507)

  NCBI libraries for graphic biology applications

• dep: libx11-6

  X11 client-side library

• dep: libxmu6

  X11 miscellaneous utility library

• dep: libxt6

  X11 toolkit intrinsics library

• sug: boxshade

  Pretty-printing of multiple sequence alignments

• sug: texshade

  Package not available

  or texlive-latex-extra

  TeX Live: LaTeX supplementary packages

Download clustalx

Download for all available architectures

Architecture	Package Size	Installed Size	Files
s390	238.3 kB	704.0 kB	[list of files]