Package: amap-align (2.2-1)

Links for amap-align

Debian Resources:

Download Source Package amap-align:

Maintainers:

Debian-Med Packaging Team (QA Page, Mail Archive)
Charles Plessy (QA Page)
David Paleino (QA Page)
Andreas Tille (QA Page)

External Resources:

Homepage [bio.math.berkeley.edu]

Similar packages:

Protein multiple alignment by sequence annealing

AMAP is a command line tool to perform multiple alignment of peptidic sequences. It utilizes posterior decoding, and a sequence-annealing alignment, instead of the traditional progressive alignment method. It is the only alignment program that allows to control the sensitivity / specificity tradeoff. It is based on the ProbCons source code, but uses alignment metric accuracy and eliminates the consistency transformation.

The java visualisation tool of AMAP 2.2 is not yet packaged in Debian.

Tags: Field: Biology, Bioinformatics, Implemented in: C++, User Interface: Command Line, Role: Program, Scope: Utility, Purpose: Analysing, Comparing, Supports Format: Plain Text

Other Packages Related to amap-align

depends

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suggests

dep: libc6 (>= 2.7-1)

Embedded GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
dep: libgcc1 (>= 1:4.1.1-21)

GCC support library
dep: libstdc++6 (>= 4.2.1-4)

The GNU Standard C++ Library v3

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Architecture	Package Size	Installed Size	Files
mips	155.7 kB	384.0 kB	[list of files]